View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_high_10 (Length: 344)
Name: NF0855_high_10
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_high_10 |
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| [»] scaffold0005 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 91 - 248
Target Start/End: Original strand, 441075 - 441231
Alignment:
| Q |
91 |
caaaaattactagaagcatggttgtatataagaaatagttagccatgataacagataaacaaaataagtgtggttgcgtatggnnnnnnntagtcatggc |
190 |
Q |
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| T |
441075 |
caaaaattacaagaagcatggttatatataagaaatagttaaccatgataacagataaacaaaataagtgtggttgcgtatggaaaaaaataatcatggc |
441174 |
T |
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| Q |
191 |
ttacatataataaaaaggtaaggacatagtagacaaactggaatattatctaatataa |
248 |
Q |
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| T |
441175 |
ttacatataa-aaaaaaacaaggacaaaatagacaaactggaatattatataatataa |
441231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 440559 - 440657
Alignment:
| Q |
1 |
caagagttgtttttaaatacagtaaactataagcaccgtaaaatataagcatgataatgaaatgaaaagccaattattttgcaggtaaaacaaaaatta |
99 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
440559 |
caagagttgtttttaaatacagtaaattacaagcaccgtaaaatataagcatgataatgaaatgaaaagccaatgattttgcatgtaaaacaaaaatta |
440657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 45781233 - 45781406
Alignment:
| Q |
76 |
attttgcaggtaaaacaaaaattactagaagcatggttgtatataagaaatagttagccatgataacagataaacaaaataagtgtggttgcgtat-ggn |
174 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| || |
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| T |
45781233 |
attttgcgagtaaaacaaaaattactagaagcatggttgtatataagaaataggtggccatgataacagagaaacaaaataagtgtggttgcgtatggga |
45781332 |
T |
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| Q |
175 |
nnnnnntagtcatggcttacatat-aataaaaaggtaaggacatagtagacaaactggaatattatctaatata |
247 |
Q |
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| T |
45781333 |
aagaaataatcatggtttacatataaaaaaaaaagcaaggacataatagacaaactggaatattatataatata |
45781406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 14564519 - 14564613
Alignment:
| Q |
5 |
agttgtttttaaatacagtaaactataagcaccgtaaaatataagcatgataatgaaatgaaaagccaattattttgcaggtaaaacaaaaatta |
99 |
Q |
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| T |
14564519 |
agttgtttttaaatacagtaaattataagcaccgtaaaatataagcatgataatgaaatgaaaagccaatgattttgcatgtaaaacaaaaatta |
14564613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 91 - 173
Target Start/End: Original strand, 14565032 - 14565114
Alignment:
| Q |
91 |
caaaaattactagaagcatggttgtatataagaaatagttagccatgataacagataaacaaaataagtgtggttgcgtatgg |
173 |
Q |
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| T |
14565032 |
caaaaattactagaagcatggttgtatataagaaatagttggccatgataacagataaacaaaataagcctggttgcgtatgg |
14565114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 252856 - 252762
Alignment:
| Q |
5 |
agttgtttttaaatacagtaaactataagcaccgtaaaatataagcatgataatgaaatgaaaagccaattattttgcaggtaaaacaaaaatta |
99 |
Q |
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| T |
252856 |
agttgtttttaaatacagtaaattataagcaccgtaaaatataagcatgataatgaaatgaaaagccaatgattttgcatgtaaaacaaaaatta |
252762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 252343 - 252261
Alignment:
| Q |
91 |
caaaaattactagaagcatggttgtatataagaaatagttagccatgataacagataaacaaaataagtgtggttgcgtatgg |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
252343 |
caaaaattactagaagcatggttgtatataagaaatagttggccatgataacagataaacaaaataagcctggttgcgtatgg |
252261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 28261184 - 28261117
Alignment:
| Q |
1 |
caagagttgtttttaaatacagtaaactataagcaccgtaaaatataagcatgataatgaaatgaaaa |
68 |
Q |
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| T |
28261184 |
caagagttgtttttaaatacagtaaactataagcaccgtaaaatataagcatgataatgaaatgaaaa |
28261117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 31619279 - 31619346
Alignment:
| Q |
1 |
caagagttgtttttaaatacagtaaactataagcaccgtaaaatataagcatgataatgaaatgaaaa |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31619279 |
caagagttgtttttaaatacagtaaactataagcaccgtaaaatataagcatgataatgaaaagaaaa |
31619346 |
T |
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