View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_high_11 (Length: 342)
Name: NF0855_high_11
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 103 - 330
Target Start/End: Original strand, 51115610 - 51115837
Alignment:
| Q |
103 |
ccattttgaaacaagatggtaaaggaaagctgtatgaccatattgagctgcaacatgtgttgtctgatacccatacttgtcagcagaattcaattcagca |
202 |
Q |
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| T |
51115610 |
ccattttgaaacaagatggtaaaggaaagctgtatgaccatattgagctgcaacatgtgttgtctgatacccatacttgtcagcagaattcaattcagca |
51115709 |
T |
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| Q |
203 |
ccctctttgagtaaaagctctgcaacctcaatacaacctcgaaccgcactccaatgcaatgccgtttggccattacgatctgttgcatttatatctccac |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51115710 |
ccctctttgagtaaaagctctgcaacctcaatacaacctcgaaccgcactccaatgcaatgccgtttggccattacgatctgttgcgtttatatctccac |
51115809 |
T |
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| Q |
303 |
catgatcgatgatgtactgagcaacagc |
330 |
Q |
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| T |
51115810 |
catgatcgatgatgtactgagcaacagc |
51115837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 103 - 329
Target Start/End: Original strand, 51106274 - 51106500
Alignment:
| Q |
103 |
ccattttgaaacaagatggtaaaggaaagctgtatgaccatattgagctgcaacatgtgttgtctgatacccatacttgtcagcagaattcaattcagca |
202 |
Q |
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| T |
51106274 |
ccattttgaaacaatgtggtaaaggaaagatgtttgatcatattgagcagcaacatgtattgtctgatacccatccttgtcagcagaattcaattgagca |
51106373 |
T |
|
| Q |
203 |
ccctctttgagtaaaagctctgcaacctcaatacaacctcgaaccgcactccaatgcaatgccgtttggccattacgatctgttgcatttatatctccac |
302 |
Q |
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| T |
51106374 |
ccctctttgagtaaaaggtctgcaacctcaacagaaccccgtacggcactccaatgcaatgctgtctagccactacgatcttttgcatttatatctccac |
51106473 |
T |
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| Q |
303 |
catgatcgatgatgtactgagcaacag |
329 |
Q |
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| T |
51106474 |
catgatcaatgatgtacttagcaacag |
51106500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 306
Target Start/End: Complemental strand, 48033900 - 48033760
Alignment:
| Q |
166 |
ctgatacccatacttgtcagcagaattcaattcagcaccctctttgagtaaaagctctgcaacctcaatacaacctcgaaccgcactccaatgcaatgcc |
265 |
Q |
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||||||||||| | ||||||||| |||| | ||||||||||| |||||| ||||||||||||| |||| ||| ||||||||||||||||||||||| |
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| T |
48033900 |
ctgatacccattcatgtcagcagcgttcactcgagcaccctcttggagtaatagctctgcaacctgaatagcaccccgaaccgcactccaatgcaatgct |
48033801 |
T |
|
| Q |
266 |
gtttggccattacgatctgttgcatttatatctccaccatg |
306 |
Q |
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| T |
48033800 |
gtctggccagaatgatctgttgcatttacatctccaccatg |
48033760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 48034170 - 48034105
Alignment:
| Q |
103 |
ccattttgaaacaagatggtaaaggaaagctgtatgaccatattgagctgcaacatgtgttgtctg |
168 |
Q |
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||||||||||| || || |||||||||||| || |||||||||||||| |||||||||||| |||| |
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| T |
48034170 |
ccattttgaaataacatagtaaaggaaagccgtctgaccatattgagcagcaacatgtgttatctg |
48034105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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