View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_high_14 (Length: 324)
Name: NF0855_high_14
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 7832397 - 7832128
Alignment:
| Q |
19 |
catttatcattccccacttttcaggtgatataagaaagaatagtactaggaatttgaatattgctcctcctagcgagagatgggtgtgtttttgggttgc |
118 |
Q |
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| T |
7832397 |
catttatcattccccacttttcaggtgatataagaaagaagagtactaggaatttgaatattgctcctcctagcaagagatgggtgcgtttttgggttgc |
7832298 |
T |
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| Q |
119 |
cgaggagcctttgggaataacctttgtatgttatggagatgcttccccaaaacctccctttgttcggtttgataatgttgggacaagagagtgtgaagtt |
218 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7832297 |
cgaggagcctttgagaa----------------------tgcttccccaaaacctccctttgttcggattgataatgttgggacaagagagtgtgaagtt |
7832220 |
T |
|
| Q |
219 |
tgggttcccttttcagagtaagggatttgtattacttttgaaggaataaaaggttcctatgtttgaaatagtttcaaaaagattggtctctg |
310 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7832219 |
tgggttcccttttcagactaagggatttgtattacttttgaaggaataaaaggttcctatgtttgaaatagtttcaaaaagattggtctctg |
7832128 |
T |
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