View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_high_16 (Length: 315)
Name: NF0855_high_16
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 47247035 - 47247333
Alignment:
| Q |
1 |
aatggatcaactaatgacaatccaatccaatgacgcatcatataccaaatgcgagtnnnnnnnnnnttgcaagataaaaatagatgacttgatgattcca |
100 |
Q |
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| T |
47247035 |
aatggatcaactgatgacaatccaatccaatgacgcatcatataccaaatgcgagtaaaaaagaaattgcaagataaaaatagatgacttgatgattcca |
47247134 |
T |
|
| Q |
101 |
tttcgccacaacctccaacacaattacaacaacttagtaaatgaatttgaattttgaaaagtttggcaaataaaatttaactacnnnnnnnnnntattac |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
47247135 |
tttcgccacaacctc----------acaacaacttagtaaatgaatttgaattttgaaaagtttggaaaataaaatttaactacaaaaaaaaaatattac |
47247224 |
T |
|
| Q |
201 |
aaaaatataatattattaagcatcattttaaaattgtctaaaagatgtacaaataccatttttatgtaagacacatggccattgggcttcacctaaccgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47247225 |
aaaaatataatattattaagcatcattttaaaattgtctaaaagatgtacaaataccatttttatgtaagacacatggccattgggcttcacctaaccgt |
47247324 |
T |
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