View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0855_high_2 (Length: 789)

Name: NF0855_high_2
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0855_high_2
NF0855_high_2
[»] chr4 (1 HSPs)
chr4 (30-780)||(334019-334770)


Alignment Details
Target: chr4 (Bit Score: 724; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 724; E-Value: 0
Query Start/End: Original strand, 30 - 780
Target Start/End: Complemental strand, 334770 - 334019
Alignment:
Q  30 gattcaagctgcagtaatgtatagccgatatttcttttaaattaataccgggaaaaacagatataatggcattcaaataaaacgattttaatacaaacga 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  334770 gattcaagctgcagtaatgtatagccgatatttcttttaaattaataccgggaaaagcagatataatggcattcaaataaaacgatcttaatacaaacga 334671  T
Q  130 gagaaagaaaaatgtctacttataggtaatacagcaagtaaacttgttgcatttggattttacaaattcaacttatttccttgctaattgataagcacca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  334670 gagaaagaaaaatgtctacttataggtaatacagcaagtaaacttgttgcatttggattttacaaattcaacttatttccttgctaattgataagcacca 334571  T
Q  230 aacacttgggaaacctcacttaaaagttagctgtcaaagaaaaagaaccacaccatttaactacaccgaaaatttcatactaatatggacttagcatcct 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  334570 aacacttgggaaacctcacttaaaagttagctgtcaaagaaaaagaaccacaccatttaactacaccgaaaatttcatactaatatggacttagcatcct 334471  T
Q  330 ataaaacccaagttcttatcactaatttgtacggtactagcgatcagggcctgtcttccattcatcttaaatccaatttacctccagcacaccaaaaatc 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  334470 ataaaacccaagttcttatcactaatttgtacggtactagcgatcagggcctgtcttccattcatcttaaatccaatttacctccagcacaccaaaaatc 334371  T
Q  430 gcagtgaattatgtaccctaggttttgactcaaatattttccagtttgctctctagtctagacaaattacaccctaatcactttataatttgatagctgc 529  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  334370 gcagtgaattatgtaccctaggttttgactcaaatattttccagtttgctctctagtctagacaaattacaccctaatcactttataaattgatagctgc 334271  T
Q  530 aattgtaactaagctaaccttgagaattcaattgtgagaaatacatcatataatcatataaattataaattttaaaacctacaaactaaagcagcatttt 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  334270 aattgtaactaagctaaccttgagaattcaattgtgagaaatacatcatataatcatataaattataaattttaaaacctacaaactcaagtagcatttt 334171  T
Q  630 gtattatccaacattttgacacttcaaccaatagtacatatgattcccagagagacataggtcattcgcaaataaatgaaaatgagtctaactgat-aaa 728  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  334170 gtattatccaacattttgacacttcaaccaatagtacatatgattcccagagagacataggtcattcgcaaataaatgaaaatgagtctaactgataaaa 334071  T
Q  729 atcaagccctttaaatacataccaaggatttctccattgctgctatctgtgc 780  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  334070 atcaagccctttaaatacataccaaggatttctccattgctgctatctgtgc 334019  T

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