View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_high_23 (Length: 259)
Name: NF0855_high_23
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 51115809 - 51116060
Alignment:
| Q |
1 |
ccatgatcgatgatgtactgagcaacagcagtatggttgttgagtgcagcccactgaatcacgtagtaacccaaaccatcaggctcggtaacaaggcaac |
100 |
Q |
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| T |
51115809 |
ccatgatcgatgatgtactgagcaacagcagtatggttgttgagtgcagcccactgaatcacgtaataacccaaaccatcaggctcggtaacgaggcaac |
51115908 |
T |
|
| Q |
101 |
cctcttgctccaccaatctacgcagcttctccaaatctccataagcagctgcagtgtacacatcatttcggagactgttttcagcaacttcaccagtgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
51115909 |
cctcttgctccaccaatctacgcagcttctccaaatctccataagcagccgcagtgtacacatcatttcggagactgtcttcagcaacttcaccggtgga |
51116008 |
T |
|
| Q |
201 |
agacaacgatatcgattgttgagggtgaaccttctccatgaccttcatctca |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
51116009 |
agacaacgatatcgattgttgagggtgaaccttctccatgaccttgatctca |
51116060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 51106473 - 51106668
Alignment:
| Q |
1 |
ccatgatcgatgatgtactgagcaacagcagtatggttgttgagtgcagcccactgaatcacgtagtaacccaaaccatcaggctcggtaacaaggcaac |
100 |
Q |
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|||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||| | ||||||||||| | |||||||||||||||| ||||||| |
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| T |
51106473 |
ccatgatcaatgatgtacttagcaacagaagtttggttgttgagtgcagcccactgaagcgcgtagtaacccgtagcatcaggctcggtaacgaggcaac |
51106572 |
T |
|
| Q |
101 |
cctcttgctccaccaatctacgcagcttctccaaatctccataagcagctgcagtgtacacatcatttcggagactgttttcagcaacttcaccag |
196 |
Q |
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| T |
51106573 |
cctcttgctccaccaatctacgtagcttctctaaatcctcataagcagtcgcaatgtaaacatccttctggagtctgtcttcagcgactccaccag |
51106668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 48032966 - 48032818
Alignment:
| Q |
13 |
atgtactgagcaacagcagtatggttgttgagtgcagcccactgaatcacgtagtaacccaaaccatcaggctcggtaacaaggcaaccctcttgctcca |
112 |
Q |
| |
|
|||||||||||| ||||||| |||| || || ||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| || ||||| |
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| T |
48032966 |
atgtactgagcagcagcagtgcggttattaagagcagcccactgaagagcgtagtaacccaaaccatcaggctcgttaacaagacaaccttcaatctcca |
48032867 |
T |
|
| Q |
113 |
ccaatctacgcagcttctccaaatctccataagcagctgcagtgtacac |
161 |
Q |
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|||||||| | |||||||||||||| |||||||| || ||||||||||| |
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| T |
48032866 |
ccaatctatgtagcttctccaaatccccataagccgcggcagtgtacac |
48032818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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