View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_high_24 (Length: 255)
Name: NF0855_high_24
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 15277210 - 15276987
Alignment:
| Q |
16 |
atgagttgctgtgtgtgaaaaactagggttttcttttcacggggatagagagccgcttctcatagagagagatacaacttaattacctagtcaataatga |
115 |
Q |
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| T |
15277210 |
atgagttgctgtgtgtgaaaaactagggttttcttttcacggggatagagagtcgcttctcatagagagagatacaacttaattacctggtcaataacga |
15277111 |
T |
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| Q |
116 |
gaataatgagacttcaaaacgaactacatcgagcgaacaatggctagactcgaaataattaattaactcaaaattttgatcaaatannnnnnnaattaat |
215 |
Q |
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| T |
15277110 |
gaataatgagacttcaaaacgaactacatcgaacgaacaatggctagactcgaaataattaatcaactcaaaattttgatcaaatatttttttaattaat |
15277011 |
T |
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| Q |
216 |
aagtaatttattaatatgttaaac |
239 |
Q |
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|||||||||||||||||||||||| |
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| T |
15277010 |
aagtaatttattaatatgttaaac |
15276987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 44874114 - 44874188
Alignment:
| Q |
106 |
tcaataatgagaataatgagacttcaaaacg---aactacatcgagcgaacaatggctagactcgaaataattaa |
177 |
Q |
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|||||||||||||||| |||||| |||||| ||||| | |||||||||||||||||||||| |||||||||| |
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| T |
44874114 |
tcaataatgagaataacaagactttaaaacggtgaactagagcgagcgaacaatggctagactccaaataattaa |
44874188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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