View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_high_3 (Length: 633)
Name: NF0855_high_3
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 547
Target Start/End: Complemental strand, 44346137 - 44345604
Alignment:
| Q |
14 |
atatagagagcaagcagcatccaaattctaatccacaactctaattgaacnnnnnnnnnnn-caatattgagacatatgctagactttgtttattaattt |
112 |
Q |
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| T |
44346137 |
atatagagagcaagcagcatccaaattctaatccacaactctaattgaacaaaaaaaaaaaacaatattcagacatatgctagactttgtttattaattt |
44346038 |
T |
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| Q |
113 |
cttccctcagacacattttttggattggacgatttaaaaagaaacaatatatacacacacccgaaataaaaccactagnnnnnnnnggtacaaaaagaac |
212 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44346037 |
ctaccctcagacacattttttggattggacgatttaaaaagaaacaatatatacacacacccgaaataaaaccactagttttttttggtacaaaaagaac |
44345938 |
T |
|
| Q |
213 |
tagcagttggtatccataaaaaaccctcagagcttattcagtatcaataagctcctcagagtttattgannnnnnnatgattcaacagaacttatttcta |
312 |
Q |
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| T |
44345937 |
tagcagttggtatccataaaaaaccctgagagcttatttagtatcaataagctcctcagagtttattgatttttttatgattcaacagaacttatttcta |
44345838 |
T |
|
| Q |
313 |
taacttagcttatagtaatatatatttcagttacctataaattcaagacccgtagatgcaagtttattgactagagcaagtgcgttacttgttatgtaag |
412 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44345837 |
-aacttaacttatagtaatatatatttcagttacctataaattcaagacccgtagatgcaagtttattgacaagagcaagtgcgttacttgttatgtaag |
44345739 |
T |
|
| Q |
413 |
acacgttcttaaccttattttgcagcaatttaattttcttctccgttttcccttcaaacccatcaaggcatgtgtcttcattagtaagagctgcactaat |
512 |
Q |
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| T |
44345738 |
acacgttcttaaccttattttgcagcaatttaattttcttctccgttttcccttcaaacccatcaaggcatgtgtcttcattagtaagagctgcactaat |
44345639 |
T |
|
| Q |
513 |
ccatgtgttgagatcccccatttgtgtactaaatg |
547 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
44345638 |
ccatgtgttgagatcccccatttgtgtactaaatg |
44345604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 547
Target Start/End: Original strand, 39591336 - 39591513
Alignment:
| Q |
370 |
gcaagtttattgactagagcaagtgcgttacttgttatgtaagacacgttcttaaccttattttgcagcaatttaattttcttctccgttttc-ccttca |
468 |
Q |
| |
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||||||||| |||| ||||| || |||||||| ||||| ||| | | || |||| ||||||||||||||| ||||||| | |||||||| |||| | |
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| T |
39591336 |
gcaagtttactgacaagagctagagcgttactggttatataataggctttgagaaccctattttgcagcaattgaattttccta-ccgttttcgccttga |
39591434 |
T |
|
| Q |
469 |
aacccatcaaggcatgtgtcttcattagtaagagctgcactaatccatgtgttgagatcccccatttgtgtactaaatg |
547 |
Q |
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|||||||||||||| || |||| || || || || ||||| |||||||| || || |||||||| || |||| ||||| |
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| T |
39591435 |
aacccatcaaggcaagtatcttgatctgtgagtgccgcacttatccatgtattaaggtcccccatctgggtaccaaatg |
39591513 |
T |
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