View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_high_5 (Length: 480)
Name: NF0855_high_5
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 25 - 469
Target Start/End: Original strand, 40585577 - 40586023
Alignment:
| Q |
25 |
catcaacatgtgcttttcttgttctgcaaatgtgattaagatattgttaccagttaaacaagtgaattatttgttgcatatttgtgttaaactataaata |
124 |
Q |
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| T |
40585577 |
catccacatgtgcttttcttgttctgccaatgtgattaagatattgttaccagttaaacaagtgaattatttgttgcatatttgtgttaaactataaata |
40585676 |
T |
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| Q |
125 |
taatatatttaaaattttaaagagtaggaaaatataagttcactattgaaaatataccattaattttattccnnnnnnnnnntatatataccattaattt |
224 |
Q |
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| T |
40585677 |
taatatatttaaaattttaaagagtaggaaaatataagttcactattgaaaatataccattaattttattccaaaaaaaaaa-atatataccattaattt |
40585775 |
T |
|
| Q |
225 |
taatcaattaaaatttgtttactaaattacatttataatatgattatatttcactaagttctttcatgaattcaaattcagtaatttgccataataca-t |
323 |
Q |
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| T |
40585776 |
taatcaattaaaatttgtttactaaattacatttataatatgattatatttcactaagttctttcatgaattaaaattcagtaatttgccataatacatt |
40585875 |
T |
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| Q |
324 |
ag--aacagaaaccaaatctcactcaaataattggagtaaagttaaaaatatatacaagcttatcatataccatctccatccaagattgaaaaatacatg |
421 |
Q |
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|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40585876 |
agttaaaacaaaccaaatctcactcaaataattggagtaaagttaaaaatatatacaagcttatcatataccatctccatccaagattaaaaaatacatg |
40585975 |
T |
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| Q |
422 |
catatcaacttgaattatcaaattatatatctaaaagtttgcattcat |
469 |
Q |
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| T |
40585976 |
catatcaacttgaattatcaaactatatatctaaaagtttgcattcat |
40586023 |
T |
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