View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0855_high_6 (Length: 373)
Name: NF0855_high_6
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0855_high_6 |
 |  |
|
[»] scaffold0070 (1 HSPs) |
 |  |  |
|
[»] scaffold0830 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: scaffold0070 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 4 - 363
Target Start/End: Original strand, 16406 - 16765
Alignment:
Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
|
|
||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
16406 |
ttgtgcaagcaactaatggattcaatgagagtaatttccttggaagtgggggatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
16505 |
T |
 |
Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
|
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
T |
16506 |
cgttaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatttggtaaagatt |
16605 |
T |
 |
Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaa |
303 |
Q |
|
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
16606 |
atcagcagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaa |
16705 |
T |
 |
Q |
304 |
gtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
T |
16706 |
gtttcttgcaaaggttaaatataatgatagaagttgcatctgcattggaatatcttcatc |
16765 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 4 - 364
Target Start/End: Original strand, 24912446 - 24912806
Alignment:
Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
|
|
||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
T |
24912446 |
ttgtgcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcatgggaagcttcttgatggtgagatgattgc |
24912545 |
T |
 |
Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
|
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
T |
24912546 |
agttaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgtagaatgcaatgcgatgagaaatctacgacatcgaaatctggtaaagatt |
24912645 |
T |
 |
Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaa |
303 |
Q |
|
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
T |
24912646 |
atcagcagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaa |
24912745 |
T |
 |
Q |
304 |
gtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatct |
364 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
24912746 |
gtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatct |
24912806 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 4 - 363
Target Start/End: Complemental strand, 25696058 - 25695699
Alignment:
Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
|
|
||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
25696058 |
ttgtgcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
25695959 |
T |
 |
Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
|
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
T |
25695958 |
cgttaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatctggtaaagatt |
25695859 |
T |
 |
Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaa |
303 |
Q |
|
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
T |
25695858 |
atcagcagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaa |
25695759 |
T |
 |
Q |
304 |
gtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
T |
25695758 |
gtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatctccatc |
25695699 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 25715894 - 25715532
Alignment:
Q |
1 |
aaattgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgat |
100 |
Q |
|
|
|||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || ||||||| ||||||||||||||| |
|
|
T |
25715894 |
aaattgtgcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcaaggaaagcttcatgatggtgagatgat |
25715795 |
T |
 |
Q |
101 |
tgcagttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaag |
200 |
Q |
|
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
25715794 |
tgcagtaaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaag |
25715695 |
T |
 |
Q |
201 |
attatcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtc |
300 |
Q |
|
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| |
|
|
T |
25715694 |
attatcagaagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagaaaaatggttatattcaaataaatattgtc |
25715595 |
T |
 |
Q |
301 |
taagtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
T |
25715594 |
taagtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatctccatc |
25715532 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 25453674 - 25453321
Alignment:
Q |
10 |
aagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaa |
109 |
Q |
|
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
25453674 |
aagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaa |
25453575 |
T |
 |
Q |
110 |
agtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagt |
209 |
Q |
|
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
T |
25453574 |
agtaattgatttgcaatcagaggcaaaatcaaagagctttgatgaagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagc |
25453475 |
T |
 |
Q |
210 |
agttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttct |
309 |
Q |
|
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
T |
25453474 |
agttgctcaaatcttgatttcaaatcattggtaatggaattcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctcagtttct |
25453375 |
T |
 |
Q |
310 |
tgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
25453374 |
tgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
25453321 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 25323348 - 25322995
Alignment:
Q |
10 |
aagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaa |
109 |
Q |
|
|
|||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
T |
25323348 |
aagcaactaatggattaaatgagagtaatttccttggaagggggggatttggctctgtttatcagggaaagcttcttgatggtgagatgattgcagttaa |
25323249 |
T |
 |
Q |
110 |
agtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagt |
209 |
Q |
|
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
T |
25323248 |
agtaattgatttgcaatcagaggcaaaatcaaagagctttgatgtagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagt |
25323149 |
T |
 |
Q |
210 |
agttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttct |
309 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| |
|
|
T |
25323148 |
agttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgttgacaaatggttatattcaaataactattgtctaaatttct |
25323049 |
T |
 |
Q |
310 |
tgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
25323048 |
tacaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
25322995 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 4 - 363
Target Start/End: Complemental strand, 25605335 - 25604976
Alignment:
Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
|
|
||||| ||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| |||||||| |
|
|
T |
25605335 |
ttgtgcaagcaacaaatggattcaatgagagtaatttccttggaaggggagcatttggatctgtttatcagggcaagcttcttgatggtgaaatgattgc |
25605236 |
T |
 |
Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
|
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
25605235 |
cgttaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
25605136 |
T |
 |
Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaa |
303 |
Q |
|
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
T |
25605135 |
atcagcagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagaaaaatggttatattcaaataactattgtctaa |
25605036 |
T |
 |
Q |
304 |
gtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
25605035 |
atttcttacaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
25604976 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 4 - 363
Target Start/End: Complemental strand, 25647710 - 25647351
Alignment:
Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
|
|
||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
25647710 |
ttgtgcaagcaactaatggattcaatgagagtaatttccttggaaggggagcatttggatctgtttatcaggggaagcttcttgatggtgagatgattgc |
25647611 |
T |
 |
Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
|
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |
|
|
T |
25647610 |
agttaaagtaattgatttacaatcagaggcaaaatcaaagagctttgatgcagaatgtaatgcaatgagaaatctacgacatcgaaatctggtaaagatt |
25647511 |
T |
 |
Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaa |
303 |
Q |
|
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
T |
25647510 |
atcagaagttgatcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaa |
25647411 |
T |
 |
Q |
304 |
gtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
|
|
T |
25647410 |
atttcttgcaaaggttaaatataatgatagatgttgcatcagaattggaatatctccatc |
25647351 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 4 - 363
Target Start/End: Complemental strand, 25800976 - 25800617
Alignment:
Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
|
|
||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
T |
25800976 |
ttgtgcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcaggggaagcttcctgatggtgagatgattgc |
25800877 |
T |
 |
Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
|
|
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |
|
|
T |
25800876 |
agtcaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgtcatcgaaatttggtaaagatt |
25800777 |
T |
 |
Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaa |
303 |
Q |
|
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
T |
25800776 |
atcagcagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaa |
25800677 |
T |
 |
Q |
304 |
gtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
|||||| |||||||||||||||||||||||||||||||||||| | |||||||| |||| |
|
|
T |
25800676 |
atttcttacaaaggttaaatataatgatagatgttgcatctgcagtagaatatctccatc |
25800617 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 25341681 - 25341319
Alignment:
Q |
1 |
aaattgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgat |
100 |
Q |
|
|
|||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
T |
25341681 |
aaattgtgcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcagggcaagcttcttgatggtgagatgat |
25341582 |
T |
 |
Q |
101 |
tgcagttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaag |
200 |
Q |
|
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||| |
|
|
T |
25341581 |
tgccgttaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatatggttaag |
25341482 |
T |
 |
Q |
201 |
attatcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtc |
300 |
Q |
|
|
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
T |
25341481 |
attatcagcagttgttcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacaattggttatattcaaataacaattgaa |
25341382 |
T |
 |
Q |
301 |
taagtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
T |
25341381 |
taaatttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatctccatc |
25341319 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 25686342 - 25685986
Alignment:
Q |
10 |
aagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaa |
109 |
Q |
|
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
T |
25686342 |
aagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcatgggaagcttcttgatggtgagatgattgcagttaa |
25686243 |
T |
 |
Q |
110 |
agtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagt |
209 |
Q |
|
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |
|
|
T |
25686242 |
agtaattgatttgcaatcagaggcaaaatcaatgagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatctagtaaagattatcggt |
25686143 |
T |
 |
Q |
210 |
agttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaa---ataactattgtctaagtt |
306 |
Q |
|
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| || |
|
|
T |
25686142 |
agttgctcaaatcttgattttaaatcattggtgatggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataataactattgtctaaatt |
25686043 |
T |
 |
Q |
307 |
tcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
25686042 |
tcttacaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
25685986 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 10 - 363
Target Start/End: Complemental strand, 25570578 - 25570225
Alignment:
Q |
10 |
aagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaa |
109 |
Q |
|
|
||||||| ||||||||||||||| | || || ||||||| ||||||||||| ||||| ||| |||||| |||||||||||| |||||||| || |
|
|
T |
25570578 |
aagcaacaaatggattcaatgagagaaaattacttggaagggggagctttggctctgtgtatcaaggggagcttcctgatggtgagattattgcagtcaa |
25570479 |
T |
 |
Q |
110 |
agtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagt |
209 |
Q |
|
|
|||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
T |
25570478 |
agtatttgatttacaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagt |
25570379 |
T |
 |
Q |
210 |
agttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttct |
309 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
T |
25570378 |
agttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaagtttct |
25570279 |
T |
 |
Q |
310 |
tgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
T |
25570278 |
tgcaaaggttaaatataatgatagatgttgcatctgcattgaaatatcttcatc |
25570225 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 344
Target Start/End: Original strand, 24874825 - 24875159
Alignment:
Q |
10 |
aagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaa |
109 |
Q |
|
|
||||||| ||||||||||||||| | || || ||||||| ||||||||||| ||||| ||| |||||| |||||||||||| |||||||| || |
|
|
T |
24874825 |
aagcaacaaatggattcaatgagagaaaattacttggaagggggagctttggctctgtgtatcaaggggagcttcctgatggtgagattattgcagtcaa |
24874924 |
T |
 |
Q |
110 |
agtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagt |
209 |
Q |
|
|
|||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
|
|
T |
24874925 |
agtatttgatttacaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcaatgagaaatctacgtcatcgaaatctggtaaagattatcagt |
24875024 |
T |
 |
Q |
210 |
agttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttct |
309 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
24875025 |
agttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttct |
24875124 |
T |
 |
Q |
310 |
tgcaaaggttaaatataatgatagatgttgcatct |
344 |
Q |
|
|
||||||||||||||||||||||||||| ||||||| |
|
|
T |
24875125 |
tgcaaaggttaaatataatgatagatgctgcatct |
24875159 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 25311700 - 25311445
Alignment:
Q |
1 |
aaattgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgat |
100 |
Q |
|
|
|||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
T |
25311700 |
aaattgtgcaagcaactaatggattcaatgagagtaatttccttggaagggggggatttggctctgtttatcagggcaagcttcttgatggtgagatgat |
25311601 |
T |
 |
Q |
101 |
tgcagttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaag |
200 |
Q |
|
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |
|
|
T |
25311600 |
tgccgttaaagtaattgatttgcaatcagaggcaaaatcaaagagctttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatctggttaag |
25311501 |
T |
 |
Q |
201 |
attatcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtc |
256 |
Q |
|
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
25311500 |
attatcagcagttgttcaaatcttgatttcaaatcattggtgatggagttcatgtc |
25311445 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 4 - 363
Target Start/End: Complemental strand, 25476359 - 25476000
Alignment:
Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
|
|
||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||| |||| |||||| || | ||| |||||||||||| |
|
|
T |
25476359 |
ttgtgcaagcaactaatggattcaatgagtgtaatttacttggacgggggggctttggctctgtatatcgggggaatctccgcaatgatgagatgattgc |
25476260 |
T |
 |
Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
|
|
|||||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||| | |||||||||||||||||| ||||| || |||||| |
|
|
T |
25476259 |
ggttaaagtaattgatttgcagtcagaggcaaaagcaaagagctttgatgtagaatgcaatgcaacgagaaatctacgacatcgaaatcttgttaagatt |
25476160 |
T |
 |
Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaa |
303 |
Q |
|
|
|| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| | |||| | | |
|
|
T |
25476159 |
atttgtagttgttcaaatctcgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtggacaaatggttatatttaaataattgttgtttga |
25476060 |
T |
 |
Q |
304 |
gtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
T |
25476059 |
gtttcttgcaaaggttgaatataatgatagatgttgcatctgcattggaatatctccatc |
25476000 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 363
Target Start/End: Complemental strand, 23258890 - 23258543
Alignment:
Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
|
|
||||| ||||||| ||||||||||||||| | ||||| ||||||| ||||||||||| ||||| |||||||||| |||||||||||||||||| |
|
|
T |
23258890 |
ttgtgcaagcaacaaatggattcaatgagagcaatttacttggaacggggggctttggctctgtgtatcaagggaagcttcctgatggtgagatgattgc |
23258791 |
T |
 |
Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
|
|
|||||||||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||| |
|
|
T |
23258790 |
agttaaagtatttgatttgcaaaca------------aagagctttgatgcagaatgcaatgcaatgagaaatctacggcatcgaaatctggttaagatt |
23258703 |
T |
 |
Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaa |
303 |
Q |
|
|
||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| |||| ||| |
|
|
T |
23258702 |
atcagcagttgttccaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtggacaaatggttatattcagataaccattgcttaa |
23258603 |
T |
 |
Q |
304 |
gtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
T |
23258602 |
atttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatctccatc |
23258543 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 4 - 363
Target Start/End: Original strand, 22900172 - 22900531
Alignment:
Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
|
|
||||| ||||||| |||||||| |||||| ||||||| ||||||| |||||| ||||| ||| ||||||||||| |||||||||| |||| |
|
|
T |
22900172 |
ttgtgcaagcaacaaatggatttaatgagagtaatttgcttggaaggggaggatttgggtctgtgtatgaggggaagctttcaaatggtgagatatttgc |
22900271 |
T |
 |
Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
|
|
|||||||| ||||||||| | || ||| ||||| | |||||||||| |||||||||||| ||||||||||||| ||||| |||||||| |||||| |
|
|
T |
22900272 |
ggttaaagtgattgatttgaactcggaggaaaaattacggagctttgatcgagaatgcaatgcattgagaaatctacggcatcgaaatctggttaagatt |
22900371 |
T |
 |
Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaa |
303 |
Q |
|
|
||||| ||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| ||| |
|
|
T |
22900372 |
atcagcagttgttcaaatattgatttcaaagcattggtgatggagttcatgtcaaatggaagtgtggacaaatggttatattcaaataattgttgtttaa |
22900471 |
T |
 |
Q |
304 |
gtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
T |
22900472 |
atttcttgcaaaggttaaatataatgatagatgttgcatatgcattggaatatctccatc |
22900531 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 305 - 363
Target Start/End: Complemental strand, 25490594 - 25490536
Alignment:
Q |
305 |
tttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
25490594 |
tttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
25490536 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 57 - 363
Target Start/End: Original strand, 3945 - 4251
Alignment:
Q |
57 |
tttggctctgtttatcaggggaagcttcttgatggtgagatgattgcagttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcag |
156 |
Q |
|
|
||||| ||||| ||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| || |
|
|
T |
3945 |
tttggttctgtgtatgaggggaagcttcctaatggtgagatgattgcagttaaagtaattgatttgcaatctgaggcaaaatcaaagagttttgatgtag |
4044 |
T |
 |
Q |
157 |
aatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtc |
256 |
Q |
|
|
|||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
4045 |
aatgcaatgcaatgagaaatctacgacatcgaaatctggttaagattatcagcagttgttcaaatcttgatttcaaatcattggtgatggagttcatgtc |
4144 |
T |
 |
Q |
257 |
aaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatat |
356 |
Q |
|
|
||||||||||||||||| ||||||||||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
T |
4145 |
aaatggaagtgtagacaaatggttatattcaaataaataatgtataaatttcttgcaaaggttaaatataatgatagatgttgcatcagcattggaatat |
4244 |
T |
 |
Q |
357 |
cttcatc |
363 |
Q |
|
|
|| |||| |
|
|
T |
4245 |
ctacatc |
4251 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 363
Target Start/End: Complemental strand, 10324545 - 10324192
Alignment:
Q |
4 |
ttgtggaagcaactaatggattcaatgagggtaatttccttggaannnnnnnatttggctctgtttatcaggggaagcttcttgatggtgagatgattgc |
103 |
Q |
|
|
||||||||||||| ||||| ||||||||| |||| || ||||||| ||||||||||| |||||||||| ||||| ||| |||||||||||||| |
|
|
T |
10324545 |
ttgtggaagcaacaaatggtttcaatgagagtaaattacttggaagggggagctttggctctgtgtatcaggggatgcttcctgacggtgagatgattgc |
10324446 |
T |
 |
Q |
104 |
agttaaagtaattgatttgcaatcagagacaaaatcaaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagatt |
203 |
Q |
|
|
||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||| |
|
|
T |
10324445 |
agtcaaagtaattgatt------cagaggcaaaatcaacaagctttgatgcagaatgcaatgtaatgagaaatctacgacatcgaaatctggttaagatt |
10324352 |
T |
 |
Q |
204 |
atcagtagttgctcaaatcttgatttcaaatcattggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaa |
303 |
Q |
|
|
||||||||||| ||||||| |||||||||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| ||| |
|
|
T |
10324351 |
atcagtagttgttcaaatcatgatttcaaagcattggtgctggagttcatgtcaaatggaagtgtggacgattggttatattcagataactattgcttaa |
10324252 |
T |
 |
Q |
304 |
gtttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatc |
363 |
Q |
|
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
T |
10324251 |
atttcttgcataggttaaatataatgatagatgttgcatctgcattggaatatctccatc |
10324192 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 144 - 363
Target Start/End: Original strand, 5119225 - 5119444
Alignment:
Q |
144 |
agctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtga |
243 |
Q |
|
|
||||||||||||||||||||||| ||| | || || |||||| | ||||| || | ||||| |||||||| ||||||| |||||||||||| | |||| |
|
|
T |
5119225 |
agctttgatgcagaatgcaatgcaatgcgcaaccttcgacatagaaatctagttcaaattatgagtagttgttcaaatcctgatttcaaatctctagtga |
5119324 |
T |
 |
Q |
244 |
tggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcatc |
343 |
Q |
|
|
||||||| ||||||||||||||||| || || |||||||| || ||||||||| | | ||||||||||||||| || |||||||||||||| ||||| |
|
|
T |
5119325 |
tggagtttatgtcaaatggaagtgtggaaagatggttatactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatc |
5119424 |
T |
 |
Q |
344 |
tgcattggaatatcttcatc |
363 |
Q |
|
|
||||||||| |||||||||| |
|
|
T |
5119425 |
tgcattggagtatcttcatc |
5119444 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 144 - 363
Target Start/End: Original strand, 5101666 - 5101885
Alignment:
Q |
144 |
agctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtga |
243 |
Q |
|
|
||||||||||||||||||||||| ||| | || || |||||| | ||||| || | ||||| |||||||| ||||||| |||||||||||| | |||| |
|
|
T |
5101666 |
agctttgatgcagaatgcaatgcaatgcgcaaccttcgacatagaaatctagttcaaattatgagtagttgttcaaatcctgatttcaaatctctagtga |
5101765 |
T |
 |
Q |
244 |
tggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcatc |
343 |
Q |
|
|
||||||| ||||||||||||||||| || || |||||||| || ||||||||| | | ||||||||||||||| || |||||||||||||| ||||| |
|
|
T |
5101766 |
tggagtttatgtcaaatggaagtgtggaaagatggttatactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatc |
5101865 |
T |
 |
Q |
344 |
tgcattggaatatcttcatc |
363 |
Q |
|
|
|||||||| ||||| |||| |
|
|
T |
5101866 |
agcattggagtatctccatc |
5101885 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 139 - 363
Target Start/End: Complemental strand, 5080313 - 5080089
Alignment:
Q |
139 |
caaagagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcatt |
238 |
Q |
|
|
|||| |||||| |||||||||||||||| ||| | ||||| || ||||| ||||| || |||| |||| ||||| |||||| || |||||| || || |
|
|
T |
5080313 |
caaaaagctttaatgcagaatgcaatgctatgcgcaatcttcggcatcgaaatcttgttgagatcatcaccagttgttcaaatgttaatttcaggtcttt |
5080214 |
T |
 |
Q |
239 |
ggtgatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgtt |
338 |
Q |
|
|
||| |||||||| |||||||||||||| | || | |||||||| | ||||||||| | || ||||||||||||| || | ||||||||||||||| |
|
|
T |
5080213 |
ggtaatggagttaatgtcaaatggaagcttggaaaaatggttatacactgataactattttttaggtttcttgcaaagattgactataatgatagatgtg |
5080114 |
T |
 |
Q |
339 |
gcatctgcattggaatatcttcatc |
363 |
Q |
|
|
|||||||||||||| |||||||||| |
|
|
T |
5080113 |
gcatctgcattggagtatcttcatc |
5080089 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 147 - 363
Target Start/End: Original strand, 16885950 - 16886166
Alignment:
Q |
147 |
tttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtgatgg |
246 |
Q |
|
|
||||| |||||||||||||| ||| | | ||| |||||||| ||||| || || |||| | ||||| |||||| |||||||| ||||||||||||| |
|
|
T |
16885950 |
tttgacgcagaatgcaatgcaatgcgcattcttcgacatcgaaatcttgttgaggttattacaagttgttcaaataaagatttcaagtcattggtgatgg |
16886049 |
T |
 |
Q |
247 |
agttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcatctgc |
346 |
Q |
|
|
|||| ||||||||||||||||| || | |||||||| || ||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |
|
|
T |
16886050 |
agtttatgtcaaatggaagtgttgaaaaatggttatactcggataactattgtttagatttcttgcaaaggttgaatataatgatagatgttgcatctgc |
16886149 |
T |
 |
Q |
347 |
attggaatatcttcatc |
363 |
Q |
|
|
|||||| ||||| |||| |
|
|
T |
16886150 |
attggagtatctccatc |
16886166 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 144 - 363
Target Start/End: Complemental strand, 14412619 - 14412400
Alignment:
Q |
144 |
agctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtga |
243 |
Q |
|
|
||||||||||||||||||||||| ||| | || || || ||| | ||||| || | |||||||||||||| ||||||| |||||||||||| | |||| |
|
|
T |
14412619 |
agctttgatgcagaatgcaatgcaatgcgcaacctccggcatagaaatctcgtccaaattatcagtagttgttcaaatcctgatttcaaatctctagtga |
14412520 |
T |
 |
Q |
244 |
tggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcatc |
343 |
Q |
|
|
||||||| |||||||| |||||| | || | |||||||| || |||||| ||| | | ||||||||||||||| || |||||||||||||| ||||| |
|
|
T |
14412519 |
tggagtttatgtcaaacggaagtttggaaaaatggttatactctaataacaattttttggatttcttgcaaaggttgaacataatgatagatgtggcatc |
14412420 |
T |
 |
Q |
344 |
tgcattggaatatcttcatc |
363 |
Q |
|
|
||||||||| ||||| |||| |
|
|
T |
14412419 |
tgcattggagtatctccatc |
14412400 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2391 times since January 2019
Visitors: 6162