View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0855_low_1 (Length: 810)

Name: NF0855_low_1
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0855_low_1
NF0855_low_1
[»] chr2 (2 HSPs)
chr2 (25-110)||(28216379-28216464)
chr2 (535-724)||(5589763-5589952)
[»] chr3 (1 HSPs)
chr3 (535-728)||(27405214-27405404)
[»] chr5 (1 HSPs)
chr5 (536-609)||(38919745-38919818)
[»] chr8 (1 HSPs)
chr8 (420-504)||(18808758-18808843)
[»] chr4 (1 HSPs)
chr4 (420-499)||(51291115-51291195)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 28216379 - 28216464
Alignment:
Q  25 catcataataaactttaaacttaagatgtaacaactaaaattgatgctgtcaagttgtaatggttgtaaccaaccatttacaccat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28216379 catcataataaactttaaacttaagatgtaacaactaaaattgatgctgtcaagttgtaatggttgtagccaaccatttacaccat 28216464  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 535 - 724
Target Start/End: Original strand, 5589763 - 5589952
Alignment:
Q  535 tggaaaaagctaaaacgcatgacataaaattttgtcaccattgcacgaatgagttgtatgttgtagttagagtacnnnnnnnnnnnnnnnnnnacttcaa 634  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||| |||||||||||| |||                  |||||||    
T  5589763 tggaaaaagctaaaacgcacgacataaaatttcttcaccattgcacgaatgagttgtaagttgtagttagaatacttttttaattatgcttttacttcaa 5589862  T
Q  635 atgattagtatagtctagcatatgtgtttgtctatgaaaaaacacaatgacttctctcctcgtaagcgtacctttgtgagttgatgatgt 724  Q
    | ||| | | ||||||||||||||||||||||||||| |||||||||  |||||||||||| | |  ||| |||||||||||| ||||||    
T  5589863 acgatcactgtagtctagcatatgtgtttgtctatgagaaaacacaaacacttctctcctcatcactgtatctttgtgagttgctgatgt 5589952  T

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Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 535 - 728
Target Start/End: Complemental strand, 27405404 - 27405214
Alignment:
Q  535 tggaaaaagctaaaacgcatgacataaaattttgtcaccattgcacgaatgagttgtatgttgtagttagagtacnnnnnnnnnnnnnnnnnnacttcaa 634  Q
    |||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||                  |||||||    
T  27405404 tggaaaaagctaaaacacacgacataaaatttcgtcaccattgcacgaatgagttgtatgttgtagttagagtacttttttaattctgtttttacttcaa 27405305  T
Q  635 atgattagtatagtctagcatatgtgtttgtctatgaaaaaacacaatgacttctctcctcgtaagcgtacctttgtgagttgatgatgtccat 728  Q
    ||||| | | ||||||||||||||||||||   |||| ||||||||| ||||||||||||| | |  |||||| ||||||||| ||||||||||    
T  27405304 atgatcactgtagtctagcatatgtgtttg---atgagaaaacacaaagacttctctcctcatcactgtacctatgtgagttgctgatgtccat 27405214  T

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Target: chr5 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 536 - 609
Target Start/End: Complemental strand, 38919818 - 38919745
Alignment:
Q  536 ggaaaaagctaaaacgcatgacataaaattttgtcaccattgcacgaatgagttgtatgttgtagttagagtac 609  Q
    |||||||| ||||| ||| |||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||    
T  38919818 ggaaaaagataaaatgcacgacataaaatttcgtcaccattgcacgaatgaattgtatgtagtagttatagtac 38919745  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 420 - 504
Target Start/End: Complemental strand, 18808843 - 18808758
Alignment:
Q  420 tttaaaataattaaagatttcaatacctaatgcaataaatgcat-aactttcctataatgttaccactttaagtgcttaaaaagca 504  Q
    ||||||| || |||||| ||||||  |||||||||||||||||| ||||||| || ||| |||||| |||| ||||||||| ||||    
T  18808843 tttaaaaaaagtaaagacttcaatttctaatgcaataaatgcataaactttcataaaatcttaccattttaggtgcttaaagagca 18808758  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 420 - 499
Target Start/End: Original strand, 51291115 - 51291195
Alignment:
Q  420 tttaaaataattaaagatttcaatacctaatgcaataaatgca-taactttcctataatgttaccactttaagtgcttaaa 499  Q
    ||||||||||||||||| ||||||  | |||||||||||||||  ||||||| || ||| |||||| |||| |||||||||    
T  51291115 tttaaaataattaaagacttcaatttccaatgcaataaatgcacaaactttcataaaatcttaccattttaggtgcttaaa 51291195  T

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