View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_low_11 (Length: 371)
Name: NF0855_low_11
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 29 - 360
Target Start/End: Complemental strand, 14248967 - 14248636
Alignment:
| Q |
29 |
atcttcatggttttgataggactcaaggggaggacgagtggtgttggaagttggaggatggaggccgcttcacggttagtttaacctacaagaagttggc |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248967 |
atcttcatggttttgataggactcaaggggaggacgagtggtgttggaagttggaggacggaggccgcttcacggttagtttaacctacaagaagttggc |
14248868 |
T |
|
| Q |
129 |
ggaggtatcgctggtggaggatgagtggggagaggcggagtatcgggttttcggccaaatttggaagagtccggctccgtctaaggcggtggctctttct |
228 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248867 |
ggaggtattgctggtggaggatgagtggggagaggcggagtatcgggttttcggccaaatttggaagagtccggctccgtctaaggcggtggctctttct |
14248768 |
T |
|
| Q |
229 |
tggaagggtttgcttagtcgagtaccaactagagtgaatttagtgaggagaaatacattgccaacaaatgcgagctctatttgtgttttttgtaatgtgg |
328 |
Q |
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||||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248767 |
tggaagggttttcttaatcgagtacccactagagtgaatttagtgcggagaaatacattgccaacaaatgcgagctctatttgtgttttttgtaatgtgg |
14248668 |
T |
|
| Q |
329 |
aggacgagtccacaaatcatctatttcttcat |
360 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |
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| T |
14248667 |
aggaggagtccacaaatcatctatttcttcat |
14248636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 13311383 - 13311501
Alignment:
| Q |
153 |
gtggggagaggcggagtatcgggttttcggccaaatttggaagagtccggctccgtctaaggcggtggctctttcttggaagggtttgcttagtcgagta |
252 |
Q |
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|||||| ||||||||| ||| |||||| || ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| | || || |
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| T |
13311383 |
gtggggtgaggcggagaatcaggtttttggtcaaatttggaagagtccggctccctctaaggcggtgactctttcttggaagggtttgctaaaccgtgtt |
13311482 |
T |
|
| Q |
253 |
ccaactagagtgaatttag |
271 |
Q |
| |
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||||||||||||||||||| |
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| T |
13311483 |
ccaactagagtgaatttag |
13311501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 57 - 360
Target Start/End: Original strand, 29298347 - 29298650
Alignment:
| Q |
57 |
ggaggacgagtggtgttggaagttggaggatggaggccgcttcacggttagtttaacctacaagaagttggcggaggtatcgctggtggaggatgagtgg |
156 |
Q |
| |
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|||||| | ||||||||||||||||||| | ||||| | || ||||||||||| | || |||||||||||||| | |||||| | | |||| | |||| |
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| T |
29298347 |
ggaggatgtgtggtgttggaagttggagaagggaggttgttttacggttagttttatatataagaagttggcggaagcatcgcttgcgaaggaggtgtgg |
29298446 |
T |
|
| Q |
157 |
ggagaggcggagtatcgggttttcggccaaatttggaagagtccggctccgtctaaggcggtggctctttcttggaagggtttgcttagtcgagtaccaa |
256 |
Q |
| |
|
|||||||||||| |||||||||| | |||||||||||| |||||| |||| ||||| | ||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
29298447 |
ggagaggcggagaatcgggtttttgcccaaatttggaaaagtccgactccatctaaagtggtggctctctcttggaagggtttgcttaatcgagtaccaa |
29298546 |
T |
|
| Q |
257 |
ctagagtgaatttagtgaggagaaatacattgccaacaaatgcgagctctatttgtgttttttgtaatgtggaggacgagtccacaaatcatctatttct |
356 |
Q |
| |
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||| || ||||||| || |||||||| ||||||| ||||||| || ||| |||||| || ||||||| || || ||||| | |||||||| ||||| |
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| T |
29298547 |
ctacagggaatttattgcggagaaatgcattgccgccaaatgctagtcctaattgtgtgttgtgtaatgaggcggtggagtctgcgaatcatctttttct |
29298646 |
T |
|
| Q |
357 |
tcat |
360 |
Q |
| |
|
|||| |
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|
| T |
29298647 |
tcat |
29298650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 29 - 271
Target Start/End: Complemental strand, 50192756 - 50192514
Alignment:
| Q |
29 |
atcttcatggttttgataggactcaaggggaggacgagtggtgttggaagttggaggatggaggccgcttcacggttagtttaacctacaagaagttggc |
128 |
Q |
| |
|
||||||| || ||||| || |||||||||| || |||||| | ||||||||||||||| |||| |||| |||||| ||| |||||||||||||||||| |
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| T |
50192756 |
atcttcaaggctttgagtggtctcaaggggaagatgagtggaggtggaagttggaggatagaggttgctttacggttggttcaacctacaagaagttggc |
50192657 |
T |
|
| Q |
129 |
ggaggtatcgctggtggaggatgagtggggagaggcggagtatcgggttttcggccaaatttggaagagtccggctccgtctaaggcggtggctctttct |
228 |
Q |
| |
|
| || ||| | | ||| ||| |||||| | ||||||| |||| || || | |||||||||||||||||||||| |||| || ||||||||||||| |
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| T |
50192656 |
agcggcgtcgattggggaagataggtggggtgtggcggagaatcgagtgtttagtaaaatttggaagagtccggctccatctagggtggtggctctttct |
50192557 |
T |
|
| Q |
229 |
tggaagggtttgcttagtcgagtaccaactagagtgaatttag |
271 |
Q |
| |
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|||||||||||||| | ||| || ||||||||||||||||||| |
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| T |
50192556 |
tggaagggtttgctaaatcgtgttccaactagagtgaatttag |
50192514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 41304287 - 41304387
Alignment:
| Q |
144 |
ggaggatgagtggggagaggcggagtatcgggttttcggccaaatttggaagagtccggctccgtctaaggcggtggctctttcttggaagggtttgctt |
243 |
Q |
| |
|
|||||||||||||||||||| ||| | || || || || ||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||||| |
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| T |
41304287 |
ggaggatgagtggggagaggaggaatgccgtgtgtttggggaaatttggaagagtccggcaccgtctaaagcggtggctctttcatgaaaggggttgctt |
41304386 |
T |
|
| Q |
244 |
a |
244 |
Q |
| |
|
| |
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|
| T |
41304387 |
a |
41304387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 3077884 - 3077835
Alignment:
| Q |
183 |
ccaaatttggaagagtccggctccgtctaaggcggtggctctttcttgga |
232 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| |||||| ||||| |||| |
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| T |
3077884 |
ccaactttggaaaagtccggctccgtctaaggtggtggcactttcgtgga |
3077835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 32123304 - 32123243
Alignment:
| Q |
174 |
ggttttcggccaaatttggaagagtccggctccgtctaaggcggtggctctttcttggaagg |
235 |
Q |
| |
|
||||||||| ||| |||||||||||| |||||| || |||| ||||||| | |||||||||| |
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|
| T |
32123304 |
ggttttcggtcaagtttggaagagtctggctccctccaaggtggtggctttctcttggaagg |
32123243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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