View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_low_12 (Length: 367)
Name: NF0855_low_12
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 25 - 367
Target Start/End: Complemental strand, 37888376 - 37888018
Alignment:
| Q |
25 |
aggtcatcaccgttcccaatttcaagcacgactaaatattttttggccaccca----taattgttttttctataatctcatgggcaccttgctctatgac |
120 |
Q |
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| T |
37888376 |
aggtcatcaccgttcccaatttcaagcacgactaaatattttttggccacccacccataattgttttttctgtaatctcatgggcaccttgctctatgac |
37888277 |
T |
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| Q |
121 |
agtagta---taacagtttttggaaggaagtactaaaacagttaaaagttgaaacagttttattagccatatgcataaccaggtcgatgtttacttactc |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37888276 |
agtagtagtataacagtttttggaaggaagtactaaaacagttaaaagttgaaacagttttattagccatatgcataaccaggtcgatgtttacttactc |
37888177 |
T |
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| Q |
218 |
ctaactcctcttttataccatagtcaatattttgttcattgatattttgctgccatgccaaacaatat---------agtataaaattaacaaaagatgc |
308 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
37888176 |
ctaactcctcttttatatcatagtcaatattttgtccattgatatttcgctgccatgccaaacaatatatagtataaaatataaaattaacaaaagatgc |
37888077 |
T |
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| Q |
309 |
aaagatttgatcaaatttcaattgggttctaatcacatctaaatcttcacattatttaa |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37888076 |
aaagatttgatcaaatttcaattgggttctaatcacatctaaatcttcacattatttaa |
37888018 |
T |
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