View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_low_16 (Length: 335)
Name: NF0855_low_16
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 30 - 335
Target Start/End: Complemental strand, 2236745 - 2236440
Alignment:
| Q |
30 |
gaatataaatacaatcacgtggaattgtgattctctccannnnnnnncaaaaaattatcctctccatttttcatttttattactatatagttttgaaggg |
129 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2236745 |
gaatataaatacaatcacgtggaattatgattctctccattttttttcaaaaaattatcctctccatttttcatttttattactatatagttttgaaggg |
2236646 |
T |
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| Q |
130 |
ttttaaagtttaaattaaataattagagtcaccaaatgtcacattattgtatttatgttctcgaaattttgttaatgnnnnnnntgagacaataaaaaat |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
2236645 |
ttttaaagtttaaattaaataattagagtcaccaaatgtcacattattgtatttatgttctcgaaattttgttaatgaaaaaaataagacaataaaaaat |
2236546 |
T |
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| Q |
230 |
agagtggatattgactcgtaaacatgagacccactaatagagaattaatttactaacaatattgggtgaattttattcctcaatcaaggacttcctactt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2236545 |
agagtggatattgactcgtaaacatgagacccactaatagagaattaatttactaacaatattgggtgaattttattcctcaatgaaggacttcctactt |
2236446 |
T |
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| Q |
330 |
atatat |
335 |
Q |
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|||||| |
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| T |
2236445 |
atatat |
2236440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 5403437 - 5403367
Alignment:
| Q |
115 |
tatagttttgaagggttttaaagtttaaattaaataattagagtcaccaaatgtcacattattgtatttat |
185 |
Q |
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||||||||| ||| |||||||||| |||||||||||||| | ||||||||||||||| |||||||||| |
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| T |
5403437 |
tatagttttaaagagttttaaagtgtaaattaaataattgaacctaccaaatgtcacattgttgtatttat |
5403367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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