View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0855_low_23 (Length: 314)

Name: NF0855_low_23
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0855_low_23
NF0855_low_23
[»] chr4 (9 HSPs)
chr4 (32-308)||(35969639-35969909)
chr4 (29-95)||(35974244-35974310)
chr4 (186-256)||(36635571-36635641)
chr4 (214-284)||(36910908-36910978)
chr4 (204-280)||(18084409-18084485)
chr4 (204-280)||(36664524-36664600)
chr4 (230-284)||(18365570-18365624)
chr4 (230-284)||(36597301-36597355)
chr4 (210-284)||(36642259-36642333)
[»] chr1 (1 HSPs)
chr1 (70-134)||(42601472-42601535)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 32 - 308
Target Start/End: Complemental strand, 35969909 - 35969639
Alignment:
Q  32 gtaacaatgttgattatcactgcaaaatcaatcttatgaaaatgcatgtgaggaatgttaccttttcagtgtgagagagattggagattgagaggtgcag 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35969909 gtaacaatgttgattatcactgcaaaatcaatcttatgaaaatgcatgtgaggaatgttaccttttcagtgtgacagagattggagattgagaggtgcag 35969810  T
Q  132 caacagaagcaggagcagcggcagcggcagaagcaggtgtggtagatgaggagaaggcagacgcggcaaactgcgaatgatagttgataatcctggcgcc 231  Q
    |||||||||||||||| |||||||      ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35969809 caacagaagcaggagcggcggcag------aagcaggtgtggtagatgaggaggaggcagacgcggcaaactgcgaatgatagttgataatcctggcgcc 35969716  T
Q  232 ctttatagattctttaacctgtttaataacagtcaatcataaactcttcttatatttatttaatttagtattatcta 308  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  35969715 ctttatagattctttaacctgtttaataacagtcaatcacaaactcttcttatatttatttaatttaatattatcta 35969639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 35974310 - 35974244
Alignment:
Q  29 aaagtaacaatgttgattatcactgcaaaatcaatcttatgaaaatgcatgtgaggaatgttacctt 95  Q
    |||||||||||||   |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35974310 aaagtaacaatgtcagttattactgcaaaatcaatcttatgaaaatgcatgtgaggaatgttacctt 35974244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 36635571 - 36635641
Alignment:
Q  186 aggcagacgcggcaaactgcgaatgatagttgataatcctggcgccctttatagattctttaacctgttta 256  Q
    |||||| | |||| || ||||||||||||||||||| | | || |||||||||||||||| ||||||||||    
T  36635571 aggcaggcacggcgaattgcgaatgatagttgataaccttcgcaccctttatagattcttcaacctgttta 36635641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 36910978 - 36910908
Alignment:
Q  214 gttgataatcctggcgccctttatagattctttaacctgtttaataacagtcaatcataaactcttcttat 284  Q
    |||||||||| | ||||||||||||||||||  |||||||||| |||||  |||| | |||||||||||||    
T  36910978 gttgataatcttcgcgccctttatagattctacaacctgtttagtaacaaccaattacaaactcttcttat 36910908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 18084485 - 18084409
Alignment:
Q  204 gcgaatgatagttgataatcctggcgccctttatagattctttaacctgtttaataacagtcaatcataaactcttc 280  Q
    ||||| ||||| |||| ||| | || |||||||||||||||  |||||||||| |||||| |||||| |||||||||    
T  18084485 gcgaacgatagctgatgatcttcgcaccctttatagattctgcaacctgtttagtaacagccaatcacaaactcttc 18084409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 36664524 - 36664600
Alignment:
Q  204 gcgaatgatagttgataatcctggcgccctttatagattctttaacctgtttaataacagtcaatcataaactcttc 280  Q
    ||||| ||||| |||| ||| | || |||||||||||||||  |||||||||| |||||| |||||| |||||||||    
T  36664524 gcgaacgatagctgatgatcttcgcaccctttatagattctgcaacctgtttagtaacagccaatcacaaactcttc 36664600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 18365624 - 18365570
Alignment:
Q  230 ccctttatagattctttaacctgtttaataacagtcaatcataaactcttcttat 284  Q
    |||||||| ||||||| |||||||||| |||||  |||||| |||||||||||||    
T  18365624 ccctttatggattcttcaacctgtttagtaacaaccaatcacaaactcttcttat 18365570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 284
Target Start/End: Original strand, 36597301 - 36597355
Alignment:
Q  230 ccctttatagattctttaacctgtttaataacagtcaatcataaactcttcttat 284  Q
    |||||||| ||||||| |||||||||| |||||  |||||| |||||||||||||    
T  36597301 ccctttatggattcttcaacctgtttagtaacaaccaatcacaaactcttcttat 36597355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 36642259 - 36642333
Alignment:
Q  210 gatagttgataatcctggcgccctttatagattctttaacctgtttaataacagtcaatcataaactcttcttat 284  Q
    ||||| |||| ||| | ||||||||||||||||||  |||||| ||| |||||  |||||| |||||||||||||    
T  36642259 gatagctgatgatcttagcgccctttatagattctacaacctgcttagtaacaaacaatcacaaactcttcttat 36642333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 42601472 - 42601535
Alignment:
Q  70 aaaatgcatgtgaggaatgttaccttttcagtgtgagagagattggagattgagaggtgcagcaa 134  Q
    ||||||||||||||||||||||||||||||| |  | ||||| || |||||||||||||||||||    
T  42601472 aaaatgcatgtgaggaatgttaccttttcagcgcaacagaga-tgaagattgagaggtgcagcaa 42601535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 934 times since January 2019
Visitors: 6134