View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0855_low_24 (Length: 314)

Name: NF0855_low_24
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0855_low_24
NF0855_low_24
[»] chr5 (1 HSPs)
chr5 (30-286)||(29772758-29773006)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 30 - 286
Target Start/End: Complemental strand, 29773006 - 29772758
Alignment:
Q  30 cttctaacataaaattcatctatctcatggccattgtatgttatgctaccagttttctgtaagaataacaaacaaacnnnnnnncagtaagaagatgatg 129  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  29773006 cttctaacataaaattcatctatctcatggccattgtaggttatgctaccagttttctgtaagaataacaaacaaacaaaaaaacagtaagaagatgatg 29772907  T
Q  130 ggtgagactaacctgtttagtacggaaactttcagattcaagggtgtcccgtgtatgatcacttccactatctcaaatctcaaattattacaatgtcaca 229  Q
    ||||||||  |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  29772906 ggtgagacatacctgtttagtacgcaaac-ttcagattcaagggtgtcccgtgtatgatcacttccact-------atctcaaattattacaatgtcaca 29772815  T
Q  230 tgtcagtgtcgtgtcccaatgtgcatgcttgatagagagtaacattctatcagatga 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29772814 tgtcagtgtcgtgtcccaatgtgcatgcttgatagagagtaacattctatcagatga 29772758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University