View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0855_low_26 (Length: 301)

Name: NF0855_low_26
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0855_low_26
NF0855_low_26
[»] chr5 (2 HSPs)
chr5 (74-293)||(8512293-8512509)
chr5 (159-204)||(31506760-31506805)
[»] chr4 (4 HSPs)
chr4 (159-204)||(23391940-23391985)
chr4 (159-204)||(49705161-49705206)
chr4 (159-201)||(45621754-45621796)
chr4 (159-204)||(48997144-48997189)
[»] chr3 (3 HSPs)
chr3 (159-226)||(40291674-40291741)
chr3 (159-204)||(50327317-50327362)
chr3 (162-206)||(44415054-44415098)
[»] chr8 (1 HSPs)
chr8 (159-204)||(4884246-4884291)
[»] chr2 (1 HSPs)
chr2 (159-204)||(43178417-43178462)
[»] chr7 (2 HSPs)
chr7 (159-201)||(17189433-17189475)
chr7 (159-204)||(31846599-31846644)


Alignment Details
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 74 - 293
Target Start/End: Complemental strand, 8512509 - 8512293
Alignment:
Q  74 atcctcatcgtacacgattacttcaaaatagtaacaatgccatgatgacacctataaaggcaataccatttaatcatcttaacatgggtggacaaaaata 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||    
T  8512509 atcctcatcgtacacgattacttcaaaatagtaacaatgccatgatgacacctataaaggcaataccatttaatcatctta---tgagtggacaaaaata 8512413  T
Q  174 accaaaaatcaaatcgaaccggttaaccgaatcttactaaaattaactgaacccgtaagttttggccttatactgcataggttttataagctccgactct 273  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  8512412 accaaaaatcaaatcgaaccggttaaccaaactttactaaaattaactgaacccataagttttggccttgtactgcataggttttataagctccgactct 8512313  T
Q  274 atctaaaacgagtataatct 293  Q
    ||||||||| ||||||||||    
T  8512312 atctaaaactagtataatct 8512293  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 31506760 - 31506805
Alignment:
Q  159 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 204  Q
    |||||| |||||||||||||||| ||| | ||||||||||||||||    
T  31506760 gggtgggcaaaaataaccaaaaaccaatttgaaccggttaaccgaa 31506805  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 23391940 - 23391985
Alignment:
Q  159 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 204  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||    
T  23391940 gggtgggcaaaaataaccaaaaatcaattcgaaccggttaaccgaa 23391985  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 49705161 - 49705206
Alignment:
Q  159 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 204  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||    
T  49705161 gggtgggcaaaaataaccaaaaaccaattcgaaccggttaaccgaa 49705206  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 45621796 - 45621754
Alignment:
Q  159 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaacc 201  Q
    ||||||||||||||||||||||| ||| || ||||||||||||    
T  45621796 gggtggacaaaaataaccaaaaaccaattcaaaccggttaacc 45621754  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 48997189 - 48997144
Alignment:
Q  159 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 204  Q
    |||||| |||||||| |||||||| |||||||| ||||||||||||    
T  48997189 gggtgggcaaaaatatccaaaaattaaatcgaatcggttaaccgaa 48997144  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 40291674 - 40291741
Alignment:
Q  159 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaatcttactaaaattaactgaacc 226  Q
    |||||| |||||||||||||||| ||| |||||||||||||||||| | ||  | |||||||||||||    
T  40291674 gggtgggcaaaaataaccaaaaaccaattcgaaccggttaaccgaaccgtatcagaattaactgaacc 40291741  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 50327317 - 50327362
Alignment:
Q  159 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 204  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||    
T  50327317 gggtgggcaaaaataaccaaaaaccaattcgaaccggttaaccgaa 50327362  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 44415054 - 44415098
Alignment:
Q  162 tggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaatc 206  Q
    |||||||||||||||||||| ||| ||||| ||||||| ||||||    
T  44415054 tggacaaaaataaccaaaaaccaattcgaatcggttaatcgaatc 44415098  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 4884246 - 4884291
Alignment:
Q  159 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 204  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||    
T  4884246 gggtgggcaaaaataaccaaaaaccaattcgaaccggttaaccgaa 4884291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 43178462 - 43178417
Alignment:
Q  159 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 204  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||||    
T  43178462 gggtgggcaaaaataaccaaaaaccaattcgaaccggttaaccgaa 43178417  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 17189475 - 17189433
Alignment:
Q  159 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaacc 201  Q
    |||||| |||||||||||||||| |||||| ||||||||||||    
T  17189475 gggtgggcaaaaataaccaaaaaccaaatctaaccggttaacc 17189433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 204
Target Start/End: Complemental strand, 31846644 - 31846599
Alignment:
Q  159 gggtggacaaaaataaccaaaaatcaaatcgaaccggttaaccgaa 204  Q
    |||||| |||||||||||||||| ||| |||||| |||||||||||    
T  31846644 gggtgggcaaaaataaccaaaaaccaattcgaactggttaaccgaa 31846599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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