View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_low_28 (Length: 287)
Name: NF0855_low_28
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 48 - 165
Target Start/End: Complemental strand, 42280522 - 42280405
Alignment:
| Q |
48 |
ataatttattcatgtgcatatgtttcattgtgtcatacaggacacgaatataccattcattattaannnnnnnnaaaaactatgtaaatattcataaaaa |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42280522 |
ataatttattcatgtgcatatgtttcattgtgtcatacaggacacgaatataccattcattattaattttttttaaaaactatgtaaatattcataaaaa |
42280423 |
T |
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| Q |
148 |
tattctatataagaaaca |
165 |
Q |
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|||| ||||||||||||| |
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| T |
42280422 |
tattgtatataagaaaca |
42280405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 48 - 165
Target Start/End: Complemental strand, 42295971 - 42295855
Alignment:
| Q |
48 |
ataatttattcatgtgcatatgtttcattgtgtcatacaggacacgaatataccattcattattaannnnnnnnaaaaactatgtaaatattcataaaaa |
147 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
42295971 |
ataatttaatcatgtgcatatgtttcattgtgtcatacaggacacgaatataccattcattattaa-tttttttaagaactatgtaaatattcataaaaa |
42295873 |
T |
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| Q |
148 |
tattctatataagaaaca |
165 |
Q |
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|||| ||||||||||||| |
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| T |
42295872 |
tattgtatataagaaaca |
42295855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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