View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_low_30 (Length: 278)
Name: NF0855_low_30
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 48 - 270
Target Start/End: Complemental strand, 6887861 - 6887639
Alignment:
| Q |
48 |
ttttagctaaacatatgaaagattgaatttttagggcataaatggaagaacctggaagatcggcgagatgggccagaagggttaagagaaattggggatt |
147 |
Q |
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| T |
6887861 |
ttttagctaaacatatgaaagattaaatttttaggtcaaaaatgtaagaacctggaagatcggcgagatgggccagaagggttaagagaaattggggatt |
6887762 |
T |
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| Q |
148 |
tagggttgttagaaggggttctgcgtgaaggtggggggttaggtttgagcttgagggaaagtgaaatgtcgagaatacccaattttcccattctttcacg |
247 |
Q |
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| T |
6887761 |
tagggttgttagaaggggttctgcgtgaaggtggggggttaggtttgagcttgagggaaagtgaaatgtcgagaatacccaattttcccattctttcacg |
6887662 |
T |
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| Q |
248 |
attttcacggattcgttcatctc |
270 |
Q |
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| T |
6887661 |
attttcacggattcgttcttctc |
6887639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 41 - 270
Target Start/End: Complemental strand, 6858803 - 6858577
Alignment:
| Q |
41 |
tgttgggttttagctaaacatatgaaagattgaatttttagggcataaatggaagaacctggaagatcggcgagatgggccagaagggttaagagaaatt |
140 |
Q |
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| T |
6858803 |
tgttgggttttagctaaacatatgaaagattgaatttttagggcaaaaatggaagaacctggaagatcggcgagatgggccagaagggttgagagaaatt |
6858704 |
T |
|
| Q |
141 |
ggggatttagggttgttagaaggggttctgcgtgaaggtggggggttaggtttgagcttgagggaaagtgaaatgtcgagaatacccaattttcccattc |
240 |
Q |
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| T |
6858703 |
ggggatttagggttgttagaaggggttctgcgtgaaggt---gggttaggtttgagcttgagggaaagtgaaatgtcgagaatacccaattttcccattc |
6858607 |
T |
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| Q |
241 |
tttcacgattttcacggattcgttcatctc |
270 |
Q |
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| T |
6858606 |
tttcgtgattttcgcggattctttcttctc |
6858577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 6849258 - 6849186
Alignment:
| Q |
198 |
ttgagggaaagtgaaatgtcgagaatacccaattttcccattctttcacgattttcacggattcgttcatctc |
270 |
Q |
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|||||||| || |||||||||| || |||||||||||||||||||||||||||||| ||||||| ||| |||| |
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| T |
6849258 |
ttgagggagagcgaaatgtcgaaaagacccaattttcccattctttcacgattttctcggattctttcttctc |
6849186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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