View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_low_33 (Length: 251)
Name: NF0855_low_33
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 44155630 - 44155869
Alignment:
| Q |
1 |
tcatcagtgttctcactactctcaccatccacattatcctctaagaactttaaattgtgatcaggggttgactatctccaatatgtcttcatttttgcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||| |||| |
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| T |
44155630 |
tcatcagtgttctcactactctcaccatccacattatcctctaagaactttaaatagtgatcaggggttgactatctccaatacgtctccattttggcaa |
44155729 |
T |
|
| Q |
101 |
taccaatgtccttattttgcatttgataaccagtctatacagtttatactcaagatttggaatgagacctgaatcaccattttttggcatcttatttgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44155730 |
taccaatgtccttattttgcatttgataaccagactatacagtttatactcaagatttggaatgagacctgaatcaccattttttggcatcttatttgtt |
44155829 |
T |
|
| Q |
201 |
caatgatttatcttgacaaattcattgcaacgtgccctat |
240 |
Q |
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| T |
44155830 |
caatgatttatcttgacaaattcattgcaacgtgtcctat |
44155869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 44214711 - 44214871
Alignment:
| Q |
7 |
gtgttctcactactctcaccatccacattatcctctaagaactttaaattgtgatcaggggttgactatctccaatatgtcttcatttttgcaataccaa |
106 |
Q |
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|||||||||| |||||||||||| ||||||||||||||||| | || | ||||||||| |||| ||||| |||| ||| || ||||||||||| || |
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| T |
44214711 |
gtgttctcaccactctcaccatcaacattatcctctaagaaatctagactgtgatcagatattgatagtctcctatatttctccaattttgcaatactaa |
44214810 |
T |
|
| Q |
107 |
tgtccttattttgcatttgataaccagtctatacagtttatactcaagatttggaatgaga |
167 |
Q |
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| T |
44214811 |
tgtccatattttgaatttgttaactagtctatacagttcgtactcaagattttcaatgaga |
44214871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 44146250 - 44146202
Alignment:
| Q |
192 |
ttatttgttcaatgatttatcttgacaaattcattgcaacgtgccctat |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44146250 |
ttatttgttcaatgatttatcttgacaaattcattgcaacgtgccctat |
44146202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 40894192 - 40894153
Alignment:
| Q |
3 |
atcagtgttctcactactctcaccatccacattatcctct |
42 |
Q |
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| T |
40894192 |
atcagtgttctcactactctcaccatccacattatcctct |
40894153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 231
Target Start/End: Complemental strand, 40894099 - 40894069
Alignment:
| Q |
201 |
caatgatttatcttgacaaattcattgcaac |
231 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
40894099 |
caatgatttatcttgacaaattcattgcaac |
40894069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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