View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_low_38 (Length: 228)
Name: NF0855_low_38
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_low_38 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 38581572 - 38581351
Alignment:
| Q |
7 |
cattttacacaatttcattacatcatcataagtaagaaaaataaacttacaaatcaaacccacttgggttaattgtctcatcccacaatcatacatccaa |
106 |
Q |
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| T |
38581572 |
cattttacacaatttcattacatcatcataagtaagaaaaataaacttacaaatcaaacccacttgggttaattgtctcatcccacaatcatatatccaa |
38581473 |
T |
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| Q |
107 |
attttccatttgaatgctgctcttaagaggcacatattctccaaggtagccaccaagatgatcatgcaaagcactcttatcaatctcttgatgatgataa |
206 |
Q |
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| T |
38581472 |
attttccatttgaatgctgctcttaagaggcacatattctccaaggtagccaccaagatgatcatgcaaagcactcttatcaatctcttgatgatgataa |
38581373 |
T |
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| Q |
207 |
ctcttgcaaacatagtaaaaca |
228 |
Q |
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| T |
38581372 |
ctcttgcaaacatagtaaaaca |
38581351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 6884389 - 6884171
Alignment:
| Q |
9 |
ttttacacaatttcattacatcatcataagtaagaaaaataaacttacaaatcaaacccacttgggttaattgtctcatcccacaatcatacatccaaat |
108 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
6884389 |
ttttacacaatttcattacatgatcataagtaagaaaaataaacttacaaatcaaacccacttgggttacc-gtctcatcccagaatcatacatccaaat |
6884291 |
T |
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| Q |
109 |
tttccatttgaatgctgctcttaagaggcacatattctccaaggtagccaccaagatgatcatgcaaagcactcttatcaatctcttgatgatgataact |
208 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| |
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| T |
6884290 |
tttccatttgaatactgctcttaagaggcacatattctccaaggtagccaccaagatgatcgtgtaaagcactcttatcaatcccttgatgatgataact |
6884191 |
T |
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| Q |
209 |
cttgcaaacatagtaaaaca |
228 |
Q |
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| T |
6884190 |
cttgcaaacatagtaaaaca |
6884171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 4098728 - 4098696
Alignment:
| Q |
195 |
tgatgatgataactcttgcaaacatagtaaaac |
227 |
Q |
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| T |
4098728 |
tgatgatgataactcttacaaacatagtaaaac |
4098696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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