View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_low_4 (Length: 630)
Name: NF0855_low_4
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 322 - 615
Target Start/End: Complemental strand, 2303334 - 2303041
Alignment:
| Q |
322 |
atggggtgtttagttttcagttaatttgtcttgcaccatgtaccaagccagaaactagaagtgttatttggaatcctagcctttcgtgaagcaaatcaag |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2303334 |
atggggtgtttagttttcagttaatttgtcttgcaccatgtaccaagccagaaactagaagtgttatttggaatcctagcctttcgtgaagcaaatcaag |
2303235 |
T |
|
| Q |
422 |
tagccgatactatattcaaaaaatagtttaagaatttagctatgttatgcagatttagcttataatatattctccggtggattttaaatcctattggcag |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2303234 |
tagccgatactatattcaaaaaatagtttaagaatttagctatgttatgcagatttagcttataatatattctccggtggattttaaatcctattggcag |
2303135 |
T |
|
| Q |
522 |
gagggagcttttgcttcctcatgatcaccaataacatatataaaatacaaatattctataatagtatgtttgcgtaaatttcaatttttcacat |
615 |
Q |
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| T |
2303134 |
gagggagcttttgcttcctcatgatcaccaataacatatataaaatacaaatattctataatagtatgtttgcgtaaatttcaatttttcacat |
2303041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 265
Target Start/End: Complemental strand, 2303626 - 2303391
Alignment:
| Q |
30 |
tccaaaagaggtttttggttggaatcatttcattctgagtagtctaatctccaccatagtaataatttgttgttaatctgtaggtcgttggcgtcgaatg |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2303626 |
tccaaaagaggtttttggttggaatcatttcattctgagcagtctaatctccaccatagtaataatttgttgttaatctgtaggtcgttggcgtcgaatg |
2303527 |
T |
|
| Q |
130 |
tgatggaatttgatttctcgaagtggacttttgcaaaagtggcatccttatgttcttcattaggcatgtgtgttgccagtgaaagnnnnnnnnnttatgt |
229 |
Q |
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| T |
2303526 |
tgatggaattagatttctcgaagtggacttttgcaaaagtggcatccttatgttcttcattaggcatgtgtgttgccagtgaaagaaaaaaaaattatgt |
2303427 |
T |
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| Q |
230 |
ggtctttcttatatgaaacctcagttattaagatac |
265 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
2303426 |
agtctttcttatatgaaacctcagttattaagatac |
2303391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 35 - 214
Target Start/End: Original strand, 34977733 - 34977912
Alignment:
| Q |
35 |
aagaggtttttggttggaatcatttcattctgagtagtctaatctccaccatagtaataatttgttgttaatctgtaggtcgttggcgtcgaatgtgatg |
134 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||| ||||||| ||||| |||| |||||| |
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| T |
34977733 |
aagaggtttttggttggaatcctttcattctgagcagtctaatctccacagtagtgataatttgttgttaatatgtaggtgattggcttcgacggtgatg |
34977832 |
T |
|
| Q |
135 |
gaatttgatttctcgaagtggacttttgcaaaagtggcatccttatgttcttcattaggcatgtgtgttgccagtgaaag |
214 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| |
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| T |
34977833 |
gaatttgatttctcgaattggacttttgcaaaagtggcatccttatgttcttgatttggcatgtgtgttcccagtgaaag |
34977912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 41 - 203
Target Start/End: Original strand, 34991686 - 34991848
Alignment:
| Q |
41 |
tttttggttggaatcatttcattctgagtagtctaatctccaccatagtaataatttgttgttaatctgtaggtcgttggcgtcgaatgtgatggaattt |
140 |
Q |
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||||||||||||||| || ||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
34991686 |
tttttggttggaatccttacatcctgagcagtctaatctccacaatagtaataatttgttgttaatctgtagaattttggcgtcgatgatgatggaattt |
34991785 |
T |
|
| Q |
141 |
gatttctcgaagtggacttttgcaaaagtggcatccttatgttcttcattaggcatgtgtgtt |
203 |
Q |
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| T |
34991786 |
gttttctcgaagtggacttttgcaaaagtggcatccttatgttcttgatttggcatgtgtgtt |
34991848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 35 - 196
Target Start/End: Original strand, 34984989 - 34985150
Alignment:
| Q |
35 |
aagaggtttttggttggaatcatttcattctgagtagtctaatctccaccatagtaataatttgttgttaatctgtaggtcgttggcgtcgaatgtgatg |
134 |
Q |
| |
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||||||||||||||||||||| || ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| || |||||| |
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| T |
34984989 |
aagaggtttttggttggaatccttacattctgagcagtctaatctccacaatagtaataatttgttgttaatctgtaggtttctggtttcatgggtgatg |
34985088 |
T |
|
| Q |
135 |
gaatttgatttctcgaagtggacttttgcaaaagtggcatccttatgttcttcattaggcat |
196 |
Q |
| |
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|||||||||| ||| ||||||||||||| |||||||||||| |||||||||| ||| ||||| |
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| T |
34985089 |
gaatttgattactccaagtggacttttgaaaaagtggcatctttatgttcttgatttggcat |
34985150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 35 - 121
Target Start/End: Original strand, 40582317 - 40582404
Alignment:
| Q |
35 |
aagaggtttttggttggaatcatttcattctgagtagtctaatctccaccatagtaataatttgttgtt-aatctgtaggtcgttggc |
121 |
Q |
| |
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||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
40582317 |
aagaggtttttggttggaatcatttcattctaagcagtctaatctccacaatagtaataatttgttgttaaatctgtaggtcgttggc |
40582404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 22646218 - 22646123
Alignment:
| Q |
88 |
gtaataatttgttgttaatctgtaggtcgttggcgtcgaatgtgatggaatttgatttctcgaagtggacttttgcaaaagtggcatccttatgttc |
184 |
Q |
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|||||| |||||||||||||||||||| | | || || | |||||||||| ||| ||||| ||||||| |||| ||| ||||||||| |||||||| |
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| T |
22646218 |
gtaatagtttgttgttaatctgtaggtagcttgcttccactgtgatggaaactgaattctccaagtgga-ttttacaacagtggcatctttatgttc |
22646123 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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