View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_low_41 (Length: 224)
Name: NF0855_low_41
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 28216414 - 28216290
Alignment:
| Q |
1 |
agttgttacatcttaagtttaaagtttattatgatgcacgaaattaggagtccttgggattataaatatgtttacaatcttagcatttggtaccacatta |
100 |
Q |
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| T |
28216414 |
agttgttacatcttaagtttaaagtttattatgatgcacgaaattaggagtccttaggattataaatatgtttacaatcttagcatttggtaccacatta |
28216315 |
T |
|
| Q |
101 |
catactagaaaactcctatattatt |
125 |
Q |
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||||||||||||||||||||||||| |
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| T |
28216314 |
catactagaaaactcctatattatt |
28216290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 17134314 - 17134360
Alignment:
| Q |
76 |
aatcttagcatttggtaccacattacatactagaaaactcctatatt |
122 |
Q |
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|||||||||||||| ||||||||||||| |||||||||| |||||| |
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| T |
17134314 |
aatcttagcatttgacaccacattacatattagaaaactcttatatt |
17134360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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