View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0855_low_7 (Length: 485)
Name: NF0855_low_7
Description: NF0855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0855_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 355 - 472
Target Start/End: Original strand, 28243540 - 28243657
Alignment:
| Q |
355 |
catttgatttttcctctaccatgggtaaagcttccgaagatagtaaatctgatttgttctgtataaagtggttgtagagctcagtttgttgtatcagaaa |
454 |
Q |
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| T |
28243540 |
catttgatttttcctctaccatgggtaaagcttccgaagatagtaaatctgatttgttctgtataaagtggctgtagagctcagtttgttgtatcagaaa |
28243639 |
T |
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| Q |
455 |
attaagcctttgcaacag |
472 |
Q |
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| T |
28243640 |
attaagcctttgctacag |
28243657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 28243186 - 28243294
Alignment:
| Q |
250 |
taacccaactgttctgctatttgaatgcttaaaaagttgttaatttttgaaccatgtagttgcatgg-cactaaacaaggttactttataggttgcaaaa |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28243186 |
taacccaactgttctgctatttgaatgcttaaaaagttgttaatcattgaaccatgtagttgcatggccactaaacaaggttactttataggttgcaaaa |
28243285 |
T |
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| Q |
349 |
caattgcat |
357 |
Q |
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|||||||| |
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| T |
28243286 |
taattgcat |
28243294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 33842690 - 33842736
Alignment:
| Q |
185 |
cttgaaactaatagaatcaaccagagtttgaaagcataagaaattca |
231 |
Q |
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| T |
33842690 |
cttgaaactgatagaatcaaccacagttggaaagcatacgaaattca |
33842736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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