View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_100 (Length: 322)

Name: NF0856_high_100
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_100
NF0856_high_100
[»] chr5 (4 HSPs)
chr5 (149-271)||(43100643-43100767)
chr5 (254-311)||(43100580-43100637)
chr5 (30-108)||(43100769-43100846)
chr5 (109-153)||(9622136-9622180)
[»] chr8 (2 HSPs)
chr8 (109-166)||(8845846-8845903)
chr8 (123-167)||(43417657-43417701)
[»] chr4 (3 HSPs)
chr4 (109-170)||(37182372-37182433)
chr4 (109-169)||(37997183-37997243)
chr4 (129-171)||(12832242-12832284)
[»] chr7 (1 HSPs)
chr7 (109-162)||(25742354-25742407)
[»] chr3 (2 HSPs)
chr3 (109-169)||(19554683-19554743)
chr3 (109-163)||(37333452-37333506)
[»] scaffold0262 (1 HSPs)
scaffold0262 (109-168)||(1636-1695)


Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 149 - 271
Target Start/End: Complemental strand, 43100767 - 43100643
Alignment:
Q  149 gctctgttgtggatgatctt--aaggtgtgtttgatcgtgttgtaggagaattaatttctgttaaatgtaattttgatcgtaagtgatttatcattggtt 246  Q
    ||||||||||||||| ||||  |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43100767 gctctgttgtggatggtcttttaaggtgtgtttgatcgcgatgtaggagaattaatttctgttaaatgtaattttgatcgtaagtgatttatcattggtt 43100668  T
Q  247 gggcagagccagaaatttagcattg 271  Q
    |||||||||||||||||||||||||    
T  43100667 gggcagagccagaaatttagcattg 43100643  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 43100637 - 43100580
Alignment:
Q  254 gccagaaatttagcattggtggtgcctagtccattgaatataatttgcagccagaatt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43100637 gccagaaatttagcattggtggtgcctagtccattgaatataatttgcagccagaatt 43100580  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 43100846 - 43100769
Alignment:
Q  30 atagggttatttgtgggcctagttagtaannnnnnnngaggtaatgagttggagaaaattgatgtttatcaaatattac 108  Q
    ||||||||||||||||||||||||| |||        |||| ||||||||||||||||||| |||||||||| ||||||    
T  43100846 atagggttatttgtgggcctagttaataatttcttttgagg-aatgagttggagaaaattggtgtttatcaagtattac 43100769  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 9622180 - 9622136
Alignment:
Q  109 tgtggacataggggacccacttaagcacccaatatgggatgctct 153  Q
    ||||||||||| |||||||||||| |||||||| || ||||||||    
T  9622180 tgtggacatagtggacccacttaaacacccaatgtgagatgctct 9622136  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 8845846 - 8845903
Alignment:
Q  109 tgtggacataggggacccacttaagcacccaatatgggatgctctgttgtggatgatc 166  Q
    |||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8845846 tgtggacataggagacccacttaagcacccaatatggggtgctctattgtggatgatc 8845903  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 43417701 - 43417657
Alignment:
Q  123 acccacttaagcacccaatatgggatgctctgttgtggatgatct 167  Q
    ||||| ||||||||||||| || | ||||||||||||||||||||    
T  43417701 acccatttaagcacccaatttgaggtgctctgttgtggatgatct 43417657  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 37182433 - 37182372
Alignment:
Q  109 tgtggacataggggacccacttaagcacccaatatgggatgctctgttgtggatgatcttaa 170  Q
    |||||||||||||||| |||||||||||||||| |||| |||||| ||||||||||||||||    
T  37182433 tgtggacataggggactcacttaagcacccaatgtggggtgctctcttgtggatgatcttaa 37182372  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 37997183 - 37997243
Alignment:
Q  109 tgtggacataggggacccacttaagcacccaatatgggatgctctgttgtggatgatctta 169  Q
    |||||||||||  |||||| |||| ||||||||||||| |||||||||||||||| |||||    
T  37997183 tgtggacatagatgacccatttaaacacccaatatggggtgctctgttgtggatggtctta 37997243  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 12832284 - 12832242
Alignment:
Q  129 ttaagcacccaatatgggatgctctgttgtggatgatcttaag 171  Q
    ||||||||||||| | ||||||||||||||||||| |||||||    
T  12832284 ttaagcacccaatttaggatgctctgttgtggatggtcttaag 12832242  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 25742407 - 25742354
Alignment:
Q  109 tgtggacataggggacccacttaagcacccaatatgggatgctctgttgtggat 162  Q
    ||||||||||| ||||| ||||||||||||||| |||| |||||||||||||||    
T  25742407 tgtggacatagaggaccaacttaagcacccaatgtggggtgctctgttgtggat 25742354  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 19554743 - 19554683
Alignment:
Q  109 tgtggacataggggacccacttaagcacccaatatgggatgctctgttgtggatgatctta 169  Q
    |||| ||||||  ||| |||||||||||||||| |||| |||| |||||||||||||||||    
T  19554743 tgtgaacatagatgactcacttaagcacccaatgtggggtgctgtgttgtggatgatctta 19554683  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 37333452 - 37333506
Alignment:
Q  109 tgtggacataggggacccacttaagcacccaatatgggatgctctgttgtggatg 163  Q
    ||||||||||||||   |||||||||||| |||||||| ||||||||||| ||||    
T  37333452 tgtggacatagggggttcacttaagcacctaatatggggtgctctgttgtagatg 37333506  T

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Target: scaffold0262 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 1695 - 1636
Alignment:
Q  109 tgtggacataggggacccacttaagcacccaatatgggatgctctgttgtggatgatctt 168  Q
    |||||| ||||||||| |||||||||||||||| |  | ||||| |||||||||||||||    
T  1695 tgtggatataggggactcacttaagcacccaatgtcaggtgctcggttgtggatgatctt 1636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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