View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_104 (Length: 316)

Name: NF0856_high_104
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_104
NF0856_high_104
[»] chr5 (7 HSPs)
chr5 (4-286)||(10825630-10825913)
chr5 (86-286)||(19876504-19876704)
chr5 (4-274)||(7262871-7263151)
chr5 (86-285)||(37980260-37980458)
chr5 (17-220)||(23067167-23067382)
chr5 (127-286)||(24169468-24169627)
chr5 (17-63)||(19876740-19876786)
[»] chr1 (9 HSPs)
chr1 (4-286)||(31387452-31387733)
chr1 (13-285)||(42463548-42463820)
chr1 (4-286)||(4911852-4912134)
chr1 (4-285)||(46192209-46192490)
chr1 (4-285)||(27105940-27106223)
chr1 (17-285)||(15291508-15291786)
chr1 (143-286)||(42055805-42055948)
chr1 (86-286)||(18242877-18243077)
chr1 (86-286)||(50914802-50915002)
[»] chr7 (10 HSPs)
chr7 (4-286)||(46526333-46526615)
chr7 (4-286)||(42014059-42014343)
chr7 (4-286)||(6272768-6273053)
chr7 (17-284)||(41964256-41964532)
chr7 (86-286)||(31593743-31593942)
chr7 (126-286)||(10554532-10554692)
chr7 (86-212)||(45075571-45075698)
chr7 (87-287)||(3939851-3940051)
chr7 (17-63)||(45415235-45415281)
chr7 (30-63)||(45075528-45075561)
[»] chr8 (7 HSPs)
chr8 (4-286)||(41269783-41270067)
chr8 (17-286)||(44115848-44116118)
chr8 (17-285)||(42095687-42095964)
chr8 (86-284)||(8317040-8317238)
chr8 (86-286)||(20477617-20477817)
chr8 (94-286)||(18701177-18701369)
chr8 (17-63)||(18701080-18701126)
[»] chr3 (14 HSPs)
chr3 (4-284)||(48164731-48165010)
chr3 (17-286)||(177751-178021)
chr3 (4-284)||(18942914-18943196)
chr3 (4-286)||(45034596-45034878)
chr3 (17-285)||(52561013-52561294)
chr3 (86-285)||(55150760-55150959)
chr3 (167-286)||(18908123-18908242)
chr3 (177-286)||(9111-9220)
chr3 (4-172)||(18911880-18912050)
chr3 (17-73)||(23585209-23585265)
chr3 (17-73)||(23600032-23600088)
chr3 (86-171)||(10817-10902)
chr3 (87-286)||(13825446-13825645)
chr3 (227-286)||(54315423-54315482)
[»] chr2 (17 HSPs)
chr2 (4-286)||(31501048-31501335)
chr2 (89-282)||(4174703-4174896)
chr2 (4-258)||(26393702-26393964)
chr2 (4-218)||(19508503-19508718)
chr2 (86-286)||(40612850-40613050)
chr2 (88-286)||(2777070-2777268)
chr2 (125-286)||(34458438-34458599)
chr2 (4-286)||(2119760-2120051)
chr2 (86-283)||(29902176-29902373)
chr2 (208-286)||(694860-694938)
chr2 (94-286)||(15738222-15738414)
chr2 (86-286)||(21833406-21833606)
chr2 (95-220)||(20725491-20725616)
chr2 (136-237)||(26172682-26172783)
chr2 (17-63)||(15738124-15738170)
chr2 (20-63)||(4174935-4174978)
chr2 (4-62)||(40612757-40612816)
[»] chr6 (7 HSPs)
chr6 (17-286)||(5620242-5620514)
chr6 (4-285)||(33523360-33523650)
chr6 (17-284)||(19268673-19268951)
chr6 (204-286)||(2946159-2946241)
chr6 (86-268)||(23058643-23058828)
chr6 (163-285)||(33522390-33522512)
chr6 (17-63)||(2946286-2946332)
[»] scaffold1043 (2 HSPs)
scaffold1043 (86-285)||(2965-3164)
scaffold1043 (30-63)||(2890-2923)
[»] chr4 (5 HSPs)
chr4 (17-286)||(54602476-54602748)
chr4 (86-284)||(39388810-39389008)
chr4 (4-281)||(12024793-12025078)
chr4 (136-285)||(16347123-16347272)
chr4 (17-63)||(39388727-39388773)
[»] scaffold0079 (1 HSPs)
scaffold0079 (136-285)||(45589-45738)
[»] scaffold0688 (1 HSPs)
scaffold0688 (86-205)||(5433-5552)
[»] scaffold0097 (1 HSPs)
scaffold0097 (95-220)||(29320-29445)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 10825630 - 10825913
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-gcctaatcataatcaac 102  Q
    |||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| |||||||    
T  10825630 atgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacataaaaaaaagcctaatcacaatcaac 10825729  T
Q  103 cctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaat 202  Q
    ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  10825730 cctactgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaat 10825829  T
Q  203 ctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    |||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  10825830 ctcctctttagtcatctcggcttgcctgaccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtcagg 10825913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 86 - 286
Target Start/End: Complemental strand, 19876704 - 19876504
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    ||||||||||||| |||||| |||| |||||||||||| ||| |||| | |||||||||||||||||||||||  |||||||||||||||||||||||||    
T  19876704 gcctaatcataattaaccctactgcgtagcatgcctcgcccctctgcgctgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgc 19876605  T
Q  186 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  19876604 atcacctcctagacaatctcctctttagtcatctcgacttgcctggccacaatatcatcagctatatgcaccacatcccggatgatcgttagtgtgtcag 19876505  T
Q  286 g 286  Q
    |    
T  19876504 g 19876504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 4 - 274
Target Start/End: Complemental strand, 7263151 - 7262871
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcac--------agtcaaaaagtacatnnnnnnn-gcctaatca 94  Q
    |||||| | ||| |||||||||||  ||||||||||||||||||||||||||||||||||        |||||||||||||||        |||| ||||    
T  7263151 atgtcggaaaatgtcatagaaataaaaaaatgtacggaacatgtcataattatacatcaccatgatcaagtcaaaaagtacataaaaaaaagccttatca 7263052  T
Q  95 taatcaaccctgctgcctagcatgcctcgaccccc-tgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctc 193  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  7263051 taatcaaccctgctgcctagcatgcctcggcccccctgcgccgcctggtaatctgatacgtaagggaagggcgaccagtaccggctatccgcatcacctc 7262952  T
Q  194 ctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgt 274  Q
    ||||||||| ||||||||||||||||  ||||||||| |||||||||| ||| |||||||||||||||| ||||| |||||    
T  7262951 ctggacaatatcctctttagtcatcttggcttgcctgaccacaatatcgtcagctatatgcaccacatctcggatgatcgt 7262871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 86 - 285
Target Start/End: Original strand, 37980260 - 37980458
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    ||||||| ||||||| |||||||| ||| | ||||||   ||||| | |||||||||||||||||| ||||||  |||||||| ||||| | ||||| ||    
T  37980260 gcctaataataatcagccctgctgtctaccctgcctctgacccctacgccgcctggcaatctgataagtaagggcagggcgactagtactg-ctatcagc 37980358  T
Q  186 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||||||| ||||| ||||||||||    
T  37980359 atcacctcgtggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcagcaatatgcaccacatcccggatgatcgtcagtgtgtcag 37980458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 23067382 - 23067167
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnn---gcctaatcataatcaaccc 104  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||         ||| |||||||||||          ||||||||||||||||| |    
T  23067382 tcatagaaataagaaaatgtacggaacatgtcataattatacatcacgatcatcaaagtaaaaaagtacataaaaaaaaaagcctaatcataatcaactc 23067283  T
Q  105 tgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatct 204  Q
    |  |||||||| ||||||| |||||||| |||||||| ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||    
T  23067282 tattgcctagcttgcctcggccccctgcgccgcctggtaatctgatacgtaagggcagggcgaccagtaccggctatccccatcacctcctggacaatct 23067183  T
Q  205 cctctttagtcatctc 220  Q
    ||||||||||||||||    
T  23067182 cctctttagtcatctc 23067167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 127 - 286
Target Start/End: Complemental strand, 24169627 - 24169468
Alignment:
Q  127 ccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttg 226  Q
    |||||| ||||||| ||||||||||  |||||  ||  |||| |||||  ||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  24169627 ccctgcgccgcctgacaatctgataattaagggcagtacgactagtactagctatccgcatcacctcctggacaatctcctttttagtcatctcggcttg 24169528  T
Q  227 cctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||||||||||||||| ||| | ||||||||||||||  |||| ||||| |||||||||||    
T  24169527 cctggccacaatatcgtcagcaatatgcaccacatcttggatgatcgtcagtgtgtcagg 24169468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 19876786 - 19876740
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac 63  Q
    |||||||||||  |||||||| ||| |||||||||||||||||||||    
T  19876786 tcatagaaataagaaaatgtatggagcatgtcataattatacatcac 19876740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 31387733 - 31387452
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaacc 103  Q
    |||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||| ||||||||    
T  31387733 atgtcggaaaatgtcatagaaatatcaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacgtaaaaaa-gcctaatcacaatcaacc 31387635  T
Q  104 ctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatc 203  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||| ||    
T  31387634 ctgctgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccacatcacctcctggacagtc 31387535  T
Q  204 tcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  31387534 tcctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtcagg 31387452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 42463548 - 42463820
Alignment:
Q  13 aatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaaccctgctgcct 112  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||       ||||||||  |||||||| ||| ||||    
T  42463548 aatatcatagaaataccaaaatgtacgaaacatgtcataattatacatcacagtgaaaaagtacataaaaaaagcctaatcgcaatcaaccatgcggcct 42463647  T
Q  113 agcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctcttta 212  Q
    ||||||||||| | |||||| ||||||| |||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42463648 agcatgcctcggctccctgcgccgcctgacaatctaatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctcgtta 42463747  T
Q  213 gtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    |||||||| |||| |||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  42463748 gtcatctcggctttcctgaccacaatatcatcagctatatgcaccacatcccggatgatcgttagtgtgtcag 42463820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 4911852 - 4912134
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaacc 103  Q
    |||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       ||||||||| ||||||||    
T  4911852 atgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacaatcaaaaagtacataaaaaaagcctaatcacaatcaacc 4911951  T
Q  104 ctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatc 203  Q
     |||||||||| |||||||  |||||||| ||||||||||||||||||  |||||  |||||||||| ||||||||| ||||||||||||||||||||||    
T  4911952 atgctgcctagtatgcctcagccccctgcgccgcctggcaatctgatatataagggcagggcgaccaataccggctacccgcatcacctcctggacaatc 4912051  T
Q  204 tcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    | ||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||| ||||| |||||||||||    
T  4912052 ttctctttagtcatctcggcttgcctggccacaatatcatcggttatatgcaccacatcccggatgatcgtcagtgtgtcagg 4912134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 4 - 285
Target Start/End: Original strand, 46192209 - 46192490
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaacc 103  Q
    |||| ||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||       | |||||||||||||| |    
T  46192209 atgttgaaaaatgtcatacaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaattacataaaaaaagtctaatcataatcaaac 46192308  T
Q  104 ctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatc 203  Q
     |||||||||| |||||||| |||||| |  |||||| ||||||||||| |||||  |||||||| |||||||| |||||||||||||||| ||||||||    
T  46192309 gtgctgcctagaatgcctcggccccctacgtcgcctgacaatctgatacataaggggagggcgactagtaccggttatccgcatcacctccaggacaatc 46192408  T
Q  204 tcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  46192409 tcctctttagtcatctcggcttgcctggccacaatatcatcaactatatgcaccacatcccggatgatcgtgagtgtgtcag 46192490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 4 - 285
Target Start/End: Original strand, 27105940 - 27106223
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn--gcctaatcataatcaa 101  Q
    |||||| | ||| ||||||||||||||||||||||| |||||||||||||||||  ||||||||||||| |||||         ||||||||| ||||||    
T  27105940 atgtcggaaaatgtcatagaaataccaaaatgtacgaaacatgtcataattatatgtcacagtcaaaaaatacataaaaaaaaagcctaatcacaatcaa 27106039  T
Q  102 ccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaa 201  Q
    || ||||||||||||||||||| |||||| | ||||||| ||||||||||| |||||  |||||||||||||||||||||||||||||||||||||| ||    
T  27106040 ccatgctgcctagcatgcctcggccccctacgccgcctgacaatctgatacataagggcagggcgaccagtaccggctatccgcatcacctcctggaaaa 27106139  T
Q  202 tctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||    
T  27106140 tctcctctttagtcatctcggcttgcctgaccacaatatcatcagctatatgcaccatatcccggatgatcgtcagtgtgtcag 27106223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 15291508 - 15291786
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnn-gcctaatcataatcaaccctg 106  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||         ||| ||| |||||||        |||||||||||||||||| |     
T  15291508 tcatagaaataaaaaaatgtacggaacatgtcataattatacatcacgatcatcacagtaaaatagtacataaaaaaaagcctaatcataatcaacctta 15291607  T
Q  107 ctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcc 206  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||||||||||  ||| |||||| ||||||||||||| |||||||||||||||||||||    
T  15291608 ctgcctagcatgcctcggccctctgcgccgcctggcaatctgatacgtaagggcaggacgaccaataccggctatccgtatcacctcctggacaatctcc 15291707  T
Q  207 tctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    | |||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||| ||||||||||    
T  15291708 tatttagtcatctcggcttgcctgaccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtcag 15291786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 143 - 286
Target Start/End: Original strand, 42055805 - 42055948
Alignment:
Q  143 aatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatca 242  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  42055805 aatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagctttcttggccacaatatca 42055904  T
Q  243 tcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
     || |||||||||| |||||| |||| ||||| |||||||||||    
T  42055905 ccaactatatgcacaacatcctggatgatcgtcagtgtgtcagg 42055948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 86 - 286
Target Start/End: Complemental strand, 18243077 - 18242877
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    ||||||| ||||||| |||||||||||| | ||||||  |||||||| |||||||||||||||||| ||||||  |||||||| |||||  | |||| |     
T  18243077 gcctaataataatcagccctgctgcctaccctgcctctgccccctgcgccgcctggcaatctgataagtaagggcagggcgactagtactagatatctgt 18242978  T
Q  186 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    |||||||||| ||| ||||||||||||||||| || |||||||||||||||||||| ||| | |||||||||| |||| |||| ||||| ||||||||||    
T  18242977 atcacctcctagacgatctcctctttagtcatatcggcttgcctggccacaatatcgtcagcaatatgcaccagatccgggatgatcgtcagtgtgtcag 18242878  T
Q  286 g 286  Q
    |    
T  18242877 g 18242877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 86 - 286
Target Start/End: Complemental strand, 50915002 - 50914802
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    ||||||| ||||||| |||||||||||| | | ||||   ||||||| ||||||| |||| ||||| ||||||  |||||| | |||||  |||||||||    
T  50915002 gcctaataataatcagccctgctgcctaccctacctctggcccctgcgccgcctgacaatttgataagtaagggcagggcggctagtactagctatccgc 50914903  T
Q  186 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||| ||| | |||||||||||||| ||||| ||| | ||||||||||    
T  50914902 atcacctcctggacgatctcctctttagtcgtctcggcttgcctggccacaatatcgtcaacaatatgcaccacatctcggatgatcctcagtgtgtcag 50914803  T
Q  286 g 286  Q
    |    
T  50914802 g 50914802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 46526333 - 46526615
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaacc 103  Q
    |||||| | ||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||        |||||||||||||||||    
T  46526333 atgtcggaaaatgtcatacaaataccaaaatgtaaggaacatgtcataattatacgtcacagtaaaaaagtacataaaaaaaccctaatcataatcaacc 46526432  T
Q  104 ctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatc 203  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||| ||||||||||    
T  46526433 ctgctgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgactagtaccggctatccgcatcacctactggacaatc 46526532  T
Q  204 tcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||||||||||||||||| |||||||| |||||||||||  || |||||||||||||||||||||| ||||| |||||||||||    
T  46526533 tcctctttagtcatctcggcttgcctagccacaatatcgccaactatatgcaccacatcccggatgatcgtcagtgtgtcagg 46526615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 42014343 - 42014059
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng--cctaatcataatcaa 101  Q
    |||||| | ||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||          |||||||||||||||    
T  42014343 atgtcggaaaatgtcatacaaataccaaaatgtacggaatatgtcataattatacataacagtaaaaaagtacataaaaaaaaaccctaatcataatcaa 42014244  T
Q  102 ccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaa 201  Q
    | |||||||||||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||    
T  42014243 ctctgctgcctagcatgcctcggccccctgctccgcctagcaatctgatacgtaagggtagggcgaccagtaccggctacccgcatcacctcctggaaaa 42014144  T
Q  202 tctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| ||||| | |||||||||    
T  42014143 tcttctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatctcggatgatcgtcaatgtgtcagg 42014059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 6272768 - 6273053
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng---cctaatcataatca 100  Q
    |||||| | ||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||           | ||||||||||||    
T  6272768 atgtcggaaaatgtcatacaaataccaaaatgtacgaaacatgtcataattatacatcacagtaaaaaagtacataaaaaaaaaaccttaatcataatca 6272867  T
Q  101 accctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggaca 200  Q
    | | | ||||||||||||||||| |||||||| |||||||| ||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||    
T  6272868 atcttactgcctagcatgcctcggccccctgcgccgcctggaaatctgatacgtaagggcagggtgaccagtaccggctatccgcatcacctcctggaca 6272967  T
Q  201 atctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||| |||||||||    
T  6272968 atctcctctttagtcatctcgtcttgcctggccacaatatcgtcaactatatgcaccacatcccagatgatcgttaatgtgtcagg 6273053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 41964532 - 41964256
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnngcctaatcataatcaaccctgc 107  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||         ||| |||||||||||       || ||||||||||||||||| |    
T  41964532 tcatagaaataagaaaatgtacggaacatgtcataattatacatcacgatcatcacagtaaaaaagtacataaaaaaagcttaatcataatcaaccctac 41964433  T
Q  108 tgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcct 207  Q
    |||||||||||||||||||||||||  || |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||    
T  41964432 tgcctagcatgcctcgaccccctgcgtcgtctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggaaaatctcct 41964333  T
Q  208 ctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtca 284  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||| ||||||||||||||| ||||| ||| |||||    
T  41964332 ctttagtcatctcggcttgcctgaccacaatatcatcaactatattcaccacatcccggatgatcgtcagtctgtca 41964256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 86 - 286
Target Start/End: Complemental strand, 31593942 - 31593743
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    ||||||| ||||||| |||||||||||| | |||||| ||||| ||| |||||||| ||||||||| ||||||  |||||||| |||||  |||||||||    
T  31593942 gcctaataataatcagccctgctgcctaccctgcctctacccc-tgcgccgcctggaaatctgataagtaagggcagggcgactagtactagctatccgc 31593844  T
Q  186 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    ||||  |||| ||| |||||||||||||||||||| ||||| || ||||||||||| ||| | || ||||||||||||||||| ||||| ||||||||||    
T  31593843 atcaaatcctagacgatctcctctttagtcatctcggcttggctagccacaatatcgtcagcaatttgcaccacatcccggatgatcgtcagtgtgtcag 31593744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 10554692 - 10554532
Alignment:
Q  126 cccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagctt 225  Q
    |||||||  ||||||||||| ||||| ||||||  |||||||| |||||  ||||||  |||||||||||||| ||||||||||||||||||||| ||||    
T  10554692 cccctgcgtcgcctggcaatttgataagtaagggcagggcgactagtactagctatctacatcacctcctggataatctcctctttagtcatctcggctt 10554593  T
Q  226 gcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    |||||||||||||||| ||| | |||||||||||||||||||| ||||| | |||||||||    
T  10554592 gcctggccacaatatcgtcaccaatatgcaccacatcccggatgatcgtcaatgtgtcagg 10554532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 86 - 212
Target Start/End: Original strand, 45075571 - 45075698
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccc-tgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccg 184  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| | | |||||||||||||||||||||||||||| || || ||||||||||||||||    
T  45075571 gcctaatcataatcaaccctgttgcctagcatgcctcgccccccctacgccgcctggcaatctgatacgtaaggatatggtgatcagtaccggctatccg 45075670  T
Q  185 catcacctcctggacaatctcctcttta 212  Q
    ||||||||| |||| |||||||||||||    
T  45075671 catcacctcttggataatctcctcttta 45075698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 87 - 287
Target Start/End: Complemental strand, 3940051 - 3939851
Alignment:
Q  87 cctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgca 186  Q
    |||||| ||||||||||||||||||||  |||| |   ||||| || | |  || ||||||||||| ||||| ||||||||||||||| | | ||||| |    
T  3940051 cctaatgataatcaaccctgctgcctacaatgcttatgcccccggcgctgattgacaatctgatacataagggtagggcgaccagtactgccaatccgga 3939952  T
Q  187 tcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||| |||||| || | |||||||||||| ||||| ||   | ||||||||| || |||| |||| ||||| |||||||  || ||||| |||||||||||    
T  3939951 tcatctcctgcaccagctcctctttagttatctcggcgctcatggccacaacattatcaactatctgcacgacatccctaatgatcgtcagtgtgtcagg 3939852  T
Q  287 t 287  Q
    |    
T  3939851 t 3939851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 45415281 - 45415235
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac 63  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||    
T  45415281 tcatggaaatacaaaaatgtacggaacatgtcataattatacatcac 45415235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 45075528 - 45075561
Alignment:
Q  30 aaaatgtacggaacatgtcataattatacatcac 63  Q
    |||||||||| |||||||||||||||||||||||    
T  45075528 aaaatgtacgaaacatgtcataattatacatcac 45075561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 41270067 - 41269783
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaa-gtacatnnnnnnngcc-taatcataatcaa 101  Q
    |||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||        || |||||||||||||    
T  41270067 atgtcggaaaatgtcatataaataccaaaatgtacggaacatgtcataattatacatcacagtaaaaaaagtaaataaaaaaaaccctaatcataatcaa 41269968  T
Q  102 ccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaa 201  Q
    |||||||||||||||||||| | |||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||    
T  41269967 ccctgctgcctagcatgccttggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcttggacaa 41269868  T
Q  202 tctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||    
T  41269867 tctcctctttagtcatctcggtttgcctggccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgtcagg 41269783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 44115848 - 44116118
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-gcctaatcataatcaaccctgctgcctagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| |||||||||| |||||||||    
T  44115848 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacataaaaaaaagcctaatcacaatcaaccctactgcctagc 44115947  T
Q  116 atgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtc 215  Q
    |||| ||  |||||||| || ||| ||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44115948 atgcatcagccccctgcgccacctagcaatctgatacgtaagggcagggcgaccggtaccggctatccgcatcacctcctggacaatctcctctttagtc 44116047  T
Q  216 atctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||  ||| ||||| |||||||||||    
T  44116048 atctcggcttgcctggccacaatatcatcagctatatgcaccacatcctagatgatcgtcagtgtgtcagg 44116118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 42095687 - 42095964
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac--------agtcaaaaagtacatnnnnnnn-gcctaatcataatcaaccctgc 107  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||||        |||||||||||||||        | ||||||||||| |||| |||    
T  42095687 tcatagaaataataaaatgtacggaacatgtcattattatacatcaccatgatcaagtcaaaaagtacataaaaaaaagtctaatcataatgaaccttgc 42095786  T
Q  108 tgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcct 207  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  42095787 tgcctagcatgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccaataccgactatccgcatcacctcctggacaatctcct 42095886  T
Q  208 ctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    ||||||||||||| |||||||| |||||||||||||||  ||||||||||||||| ||||| ||||| || |||||||    
T  42095887 ctttagtcatctcggcttgcctagccacaatatcatcaaatatatgcaccacatctcggatgatcgtcagcgtgtcag 42095964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 86 - 284
Target Start/End: Original strand, 8317040 - 8317238
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    ||||||||| ||||||||||||| ||||||||| |||  || | ||| |||||||||||||||||| ||||||  |||||||| ||||   |||||||||    
T  8317040 gcctaatcacaatcaaccctgctacctagcatgtctctgcctcatgcgccgcctggcaatctgataagtaagggcagggcgactagtagtagctatccgc 8317139  T
Q  186 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtca 284  Q
    |||||||||||||||||||||| |||||| ||||| | |||| ||||||||||||| ||| | |||||||||||||||||||| ||||| |||||||||    
T  8317140 atcacctcctggacaatctcctatttagtgatctcggtttgcttggccacaatatcgtcagcaatatgcaccacatcccggatgatcgtcagtgtgtca 8317238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 86 - 286
Target Start/End: Original strand, 20477617 - 20477817
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    ||||||| ||||||| || || | |||| | ||||||  |||||||| |||||| ||||| ||||| ||||||  |||||||| |||||  |||||||||    
T  20477617 gcctaataataatcagccatgtttcctaccctgcctctgccccctgcgccgcctcgcaatatgataagtaagggcagggcgactagtactagctatccgc 20477716  T
Q  186 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||  || ||||| ||||||||||    
T  20477717 atcacctcctggacgatctcctctttagtcatctcggcatgcctggccacaatatcatcagcaatatgcaccacatcccatatgatcgtcagtgtgtcag 20477816  T
Q  286 g 286  Q
    |    
T  20477817 g 20477817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 286
Target Start/End: Original strand, 18701177 - 18701369
Alignment:
Q  94 ataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctc 193  Q
    ||||||| |||| ||| |||  |||||||  ||||||||   |||||||||||||||||||||||  ||||||||| |||| | | ||||| ||||||||    
T  18701177 ataatcagccctactgtctacgatgcctctgccccctgcgatgcctggcaatctgatacgtaagggcagggcgaccggtactgccaatccgaatcacctc 18701276  T
Q  194 ctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||  ||| | ||||||||||||||||   |   ||| | |||||||| |||| |||| |||||||||||||  || ||||| |||||||||||    
T  18701277 ctaaacagtatcctctttagtcatcttgccgctcctagacacaatattatcagctatctgcaccacatccctaatgatcgtcagtgtgtcagg 18701369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 18701080 - 18701126
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac 63  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||    
T  18701080 tcatagaaatactaaaatgtacgaaacatgtcataataatacatcac 18701126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 4 - 284
Target Start/End: Complemental strand, 48165010 - 48164731
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaacc 103  Q
    |||||| | ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||        |||||||||||||||||    
T  48165010 atgtcggaaaatgtcatacaaataccaaaatgtacggaacatgtcataattat-catcacagtaaaaaagtacataaaaaaaccctaatcataatcaacc 48164912  T
Q  104 ctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatc 203  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||     
T  48164911 ctgctgcctagcatgcctcgaccccctgcgccgcctgacaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaata 48164812  T
Q  204 tcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtca 284  Q
    ||||||||||||||||| |||| ||||| |||||||||||||  ||||||||||||||| ||||| ||||| |||||||||    
T  48164811 tcctctttagtcatctcggctttcctggtcacaatatcatcagttatatgcaccacatctcggatgatcgtcagtgtgtca 48164731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 177751 - 178021
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-gcctaatcataatcaaccctgctgcctagc 115  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||        | ||||||||||||||||||| ||||||||    
T  177751 tcatagaaataccaaaatgtacggaacatgtcataattatactttacattcaaaaagtacataaaaaaaagtctaatcataatcaaccctgttgcctagc 177850  T
Q  116 atgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtc 215  Q
    |||||||| ||||||   |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  177851 atgcctcggccccctatgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatcttctctttagtc 177950  T
Q  216 atctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||| | ||| ||||| |||||||||||    
T  177951 atctcggcttgcctggccacaatatcatcagctatatgcaccacatctcagatgatcgtcagtgtgtcagg 178021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 18942914 - 18943196
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng--cctaatcataatcaa 101  Q
    |||||| | ||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||          |||||||||||||||    
T  18942914 atgtcggaaaatgtcatacaaataccaaaatgtacggaacatgtcataattataaatcacagtcacaaagtacataaaaaaaaaccctaatcataatcaa 18943013  T
Q  102 ccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaa 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  18943014 ccctgctgcctagcatgcctcgaccccctgcaccgcctcgcaatttgatacgtaagggcagggcgaccagtaccggctatccgtatcacctcctggacaa 18943113  T
Q  202 tctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtca 284  Q
    ||||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||| | |||| ||| | |||||||||    
T  18943114 tctcctctttagtcatctcggcttgcctggccacaatatcgtcaggtatatgcaccacatacaggatgatcatcagtgtgtca 18943196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 45034878 - 45034596
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnngcctaatcataatcaacc 103  Q
    |||||| | ||| ||||| |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||        |||||||||||||||||    
T  45034878 atgtcggaaaatgtcatacaaataccaaaatatacggaacatgtcataattatacatcagagtaaaaaagtacataaaaaaaccctaatcataatcaacc 45034779  T
Q  104 ctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatc 203  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||||||||||||   |||||| ||||||||| |||||||||||||||||||||||||    
T  45034778 ctgctgcctagcatgcctcggccccctgcgccgcctggcaatttgatacgtaagggcggggcgatcagtaccggatatccgcatcacctcctggacaatc 45034679  T
Q  204 tcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    |  || |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||  |||||||||||    
T  45034678 ttttcattagtcatctcagcttgcctggccacaatatcatcagctatatgcaccacctcccggatgatcgccagtgtgtcagg 45034596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 52561294 - 52561013
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtca---------aaaagtacatnnnnnnngcctaatcata----atcaacc 103  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| ||||         ||||||||||        ||||||||||    |||||||    
T  52561294 tcatagaaataagaaaatgtacggaacatgtcataattatacatcacggtcatcatagtaaaaaagtacataaaaaaaacctaatcatatataatcaacc 52561195  T
Q  104 ctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatc 203  Q
    || ||||||||||||||||| |||||||| ||||||| ||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  52561194 ctactgcctagcatgcctcggccccctgcgccgcctgacaatctgttacgtaagggcagggcgaccagtaccggctatccgcatcacctcctggacaatc 52561095  T
Q  204 tcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| || || ||||||||||    
T  52561094 tcctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcccggatgattgtcagtgtgtcag 52561013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 86 - 285
Target Start/End: Complemental strand, 55150959 - 55150760
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    ||||||| |||||||  | ||||||||| | ||||||  |||||||| |||||||||||||||||| ||||||  |||||||| |||||  | |||||||    
T  55150959 gcctaataataatcagtcatgctgcctaccctgcctctgccccctgcgccgcctggcaatctgataagtaagggcagggcgactagtactagttatccgc 55150860  T
Q  186 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    |||||||||| ||| ||||||||||||||| |||| ||||||||| ||| |||||| ||| | |||||||||||||| ||||| ||| | ||||||||||    
T  55150859 atcacctcctagacgatctcctctttagtcctctcggcttgcctgaccataatatcgtcagcaatatgcaccacatctcggatgatcatcagtgtgtcag 55150760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 18908242 - 18908123
Alignment:
Q  167 accagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccgg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| |||| ||| |||||||||||||||||| |    
T  18908242 accagtaccggctatccgcatcacctcctggacaatctcctctttaggcatttcggcttgcctggccacagtatcgtcagctatatgcaccacatcccag 18908143  T
Q  267 atcatcgttagtgtgtcagg 286  Q
    || ||| | |||||||||||    
T  18908142 atgatcatcagtgtgtcagg 18908123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 177 - 286
Target Start/End: Complemental strand, 9220 - 9111
Alignment:
Q  177 gctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgtta 276  Q
    ||||||||||||||||||||||||||||||| | || ||||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||| |    
T  9220 gctatccgcatcacctcctggacaatctcctttctactcatctcggcttgcctggccacaatatcatcagcaatatgcaccacatcccggatgatcgtca 9121  T
Q  277 gtgtgtcagg 286  Q
     |||||||||    
T  9120 ctgtgtcagg 9111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 18912050 - 18911880
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng---cctaatcataatca 100  Q
    |||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||           ||||||||||||||    
T  18912050 atgtcggaaaatgtcatacaaataccaaaatgtacggaacatgtcataattatacatcacagt-aaaaagtgcataaaaaaaaaaacctaatcataatca 18911952  T
Q  101 accctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagt 172  Q
    ||| ||||||||||||||| | | |||||||| |||||||||||||||||| ||||||  ||||||||||||    
T  18911951 accttgctgcctagcatgctttggccccctgcgccgcctggcaatctgatatgtaagggcagggcgaccagt 18911880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 23585265 - 23585209
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaag 73  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  23585265 tcatagaaatacaaaaatgtacggaacatgtcatagttatacatcacaatcaaaaag 23585209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 23600088 - 23600032
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaag 73  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  23600088 tcatagaaatacaaaaatgtacggaacatgtcatagttatacatcacaatcaaaaag 23600032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 10902 - 10817
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccag 171  Q
    ||||||| ||||||| |||||||||||| | ||||||  |||||||| ||||||| |||||||||| ||||||  |||||||||||    
T  10902 gcctaataataatcagccctgctgcctaccctgcctctgccccctgcgccgcctgacaatctgataagtaagggcagggcgaccag 10817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 286
Target Start/End: Original strand, 13825446 - 13825645
Alignment:
Q  87 cctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgca 186  Q
    |||||| |||||||||||| |||||||   |||||   |||||||| | ||||||||||| ||||| |||||  |||||||| |||||   | ||||  |    
T  13825446 cctaatgataatcaaccctactgcctatggtgcctatgccccctgcgctgcctggcaatccgatacataagggcagggcgactagtactatcaatccaaa 13825545  T
Q  187 tcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||| |||||| || | |||| ||||||||||||| ||   | | ||||||| || |||| |||| ||||| ||||||| ||| ||||| |||||||||||    
T  13825546 tcatctcctgcaccagctccgctttagtcatctcggcactcatagccacaacattatcagctatctgcacgacatccctgatgatcgtaagtgtgtcagg 13825645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 54315423 - 54315482
Alignment:
Q  227 cctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    |||||||||||||| ||||||||| ||||||||||||| ||| ||||| | |||||||||    
T  54315423 cctggccacaatattatcatctatctgcaccacatccctgatgatcgtcaatgtgtcagg 54315482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 31501048 - 31501335
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn-----gcctaatcataat 98  Q
    |||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||            ||||||||| |||    
T  31501048 atgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcatagtcaaaaagtacataaaaaaaaaaaagcctaatcacaat 31501147  T
Q  99 caaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctgga 198  Q
    ||||||||||||||||||||||||| ||||||||  ||||||  ||||||||||||||||  | ||||||||||||||||||||| ||||||||||||||    
T  31501148 caaccctgctgcctagcatgcctcggccccctgcgtcgcctgaaaatctgatacgtaagggcaaggcgaccagtaccggctatccacatcacctcctgga 31501247  T
Q  199 caatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| |||||||    
T  31501248 caatatcctctttagtcatctcggcttgcctggccacaatatcatcagctatatgcaccacatcccggataatcgtcagtttgtcagg 31501335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 89 - 282
Target Start/End: Complemental strand, 4174896 - 4174703
Alignment:
Q  89 taatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatc 188  Q
    |||| |||||||||||| ||||||||||| ||||||||| | || |||| |||||||||||||||||| |  ||||||||||||||||||||||||||||    
T  4174896 taattataatcaaccctactgcctagcatacctcgacccacagcgccgcttggcaatctgatacgtaacggcagggcgaccagtaccggctatccgcatc 4174797  T
Q  189 acctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgt 282  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||    
T  4174796 acctcctggacaatctcctctttagtcatctcggcttgtctggccacaatatcatcagctatatgcaccacatcccggatgatcgtcagtgtgt 4174703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 4 - 258
Target Start/End: Complemental strand, 26393964 - 26393702
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcac--------agtcaaaaagtacatnnnnnnngcctaatcat 95  Q
    |||||||| ||| |||||||||||  |||||||| |||||||||||||||||||||||||        |||||||||||||||       ||||||||||    
T  26393964 atgtcgaaaaatgtcatagaaataaaaaaatgtatggaacatgtcataattatacatcaccatgatcaagtcaaaaagtacatataaaaagcctaatcat 26393865  T
Q  96 aatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcct 195  Q
    |||||||||||||| ||||||||||||| ||||||||  |||| || ||||||||||||||||  ||||| |||||||| |||||||| |||||||||||    
T  26393864 aatcaaccctgctgactagcatgcctcggccccctgcgtcgccgggtaatctgatacgtaagggcagggcaaccagtactggctatccacatcacctcct 26393765  T
Q  196 ggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcacca 258  Q
    ||||||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||||||    
T  26393764 ggacaatctcctctttagtcatctcggattgcctggccacaatatcgtcagctatatgcacca 26393702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 19508718 - 19508503
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnng--cctaatcataatcaa 101  Q
    |||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||          |||||||||||||||    
T  19508718 atgtcggaaaatgtcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtccaaaagtacataaaaaaaaaccctaatcataatcaa 19508619  T
Q  102 ccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaa 201  Q
    | |||||||||||||||||| | |||||||  |||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||    
T  19508618 cactgctgcctagcatgccttggccccctgtgccgcctggcaatctgatacgtaaggacatg-cgaccagtaccggctatccgcatcacctcctggacaa 19508520  T
Q  202 tctcctctttagtcatc 218  Q
    |||||||||||||||||    
T  19508519 tctcctctttagtcatc 19508503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 86 - 286
Target Start/End: Original strand, 40612850 - 40613050
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    |||||||||||||||||||||||||||| ||||||||  |||||||| || |||| |||||||||||||| ||  ||||||| |||||||||| ||||||    
T  40612850 gcctaatcataatcaaccctgctgcctaccatgcctctgccccctgcgccacctgacaatctgatacgtacgggcagggcgatcagtaccggccatccgc 40612949  T
Q  186 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    |||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||| |||||||||||||| ||||| ||||||||||    
T  40612950 atcacctcctagacaatctcctctttagtcatctcggcttgcttggccacaatatcattagctatatgaaccacatcccggatgatcgtcagtgtgtcag 40613049  T
Q  286 g 286  Q
    |    
T  40613050 g 40613050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 88 - 286
Target Start/End: Complemental strand, 2777268 - 2777070
Alignment:
Q  88 ctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcat 187  Q
    ||||| ||||||| || ||||||||| | ||||||  |||||||| |||||||| ||||||||| ||||||  ||||| || |||||  |||||||||||    
T  2777268 ctaataataatcagccatgctgcctaccctgcctctgccccctgcgccgcctggaaatctgataagtaaggggagggccactagtactagctatccgcat 2777169  T
Q  188 cacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||| |||||||||||| ||||| | |||||||||    
T  2777168 cacctcctggacaatctcctctttagtcatctcggcttgcctggccacaatatcgtcaacaatatgcatcacatcccggatgatcgtcaatgtgtcagg 2777070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 125 - 286
Target Start/End: Complemental strand, 34458599 - 34458438
Alignment:
Q  125 ccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagct 224  Q
    |||||||| |||||||||||||||||| ||||||  |||| |||| ||||| |||||| | |||||||||||||||||| |||||||| ||||||| |||    
T  34458599 ccccctgcgccgcctggcaatctgatatgtaagggcagggagaccggtacctgctatctgtatcacctcctggacaatcacctctttaatcatctcggct 34458500  T
Q  225 tgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||||||||||||||||||||| ||||||||||||||||||| || ||||| |||||||||||    
T  34458499 tgcctggccacaatatcatcagctatatgcaccacatcccgaatgatcgtcagtgtgtcagg 34458438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 2119760 - 2120051
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnngcctaatca 94  Q
    |||| ||| ||| ||||||||||| ||||||||||||||||||||| ||| ||||||||          ||||||||| |||||        |||||| |    
T  2119760 atgttgaaaaatgtcatagaaatatcaaaatgtacggaacatgtcacaataatacatcatcatcatcatagtcaaaaaatacataaaaaaaacctaataa 2119859  T
Q  95 taatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcc 194  Q
    ||||||  | |||||||||   ||||||  |||||||| |||||||  ||||||||| ||||||  |  ||||| |||||  ||||||||||||||||||    
T  2119860 taatcagtcatgctgcctactctgcctctgccccctgcgccgcctgaaaatctgataagtaagggcaacgcgactagtactagctatccgcatcacctcc 2119959  T
Q  195 tggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    |||||||||||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||| |||| ||||| ||||| |||||||||||    
T  2119960 tggacaatctcctctttagtcatctcggcttgtctggccacaataccatcaactatatgcaccccatctcggatgatcgtcagtgtgtcagg 2120051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 86 - 283
Target Start/End: Complemental strand, 29902373 - 29902176
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    ||||||||| ||||||||||||||||||  ||| |||  |||||| | | |||||| ||||  ||| ||||||  |||||||||||||  | | |||||     
T  29902373 gcctaatcaaaatcaaccctgctgcctacgatgtctctgccccctacgctgcctggaaatccaatatgtaagggcagggcgaccagtagtgccaatccga 29902274  T
Q  186 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtc 283  Q
    ||||||||||| |  ||||||||||||||||||||  |   |||| ||||||||| |||| |||| ||||||||||||||||| ||||| ||||||||    
T  29902273 atcacctcctgaaatatctcctctttagtcatctcgccactcctgaccacaatattatcagctatctgcaccacatcccggatgatcgtcagtgtgtc 29902176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 694860 - 694938
Alignment:
Q  208 ctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||||||||||||| |||||||| |||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||    
T  694860 ctttagtcatctcggcttgcctagccacaatatcatcagttatatgcaccacatcccggatgatcgtcagtgtgtcagg 694938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 286
Target Start/End: Original strand, 15738222 - 15738414
Alignment:
Q  94 ataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctc 193  Q
    ||||||| |||| ||| |||  |||||||  ||||||||   |||||||||||||||||||||||  ||||||||| |||| | | ||||| ||||||||    
T  15738222 ataatcagccctactgtctacgatgcctctgccccctgcgatgcctggcaatctgatacgtaagggcagggcgaccggtactgccaatccgaatcacctc 15738321  T
Q  194 ctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||  ||| | ||||||||||||||||   |   ||| | |||||||| |||| |||| |||||||||||||  || ||||| |||||||||||    
T  15738322 ctaaacagtatcctctttagtcatcttgccgctcctagacacaatattatcagctatctgcaccacatccctaatgatcgtcagtgtgtcagg 15738414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 286
Target Start/End: Complemental strand, 21833606 - 21833406
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    ||||||| ||||||||| ||||||||||  |||||||  |||||||    ||||| ||||  |||| ||||||  ||||||||||||||   | |||||     
T  21833606 gcctaatgataatcaactctgctgcctacgatgcctctgccccctgagatgcctgacaattcgatatgtaagggcagggcgaccagtactaccaatccgg 21833507  T
Q  186 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    |||| |||||| |||| ||||||||||||||||||  | ||| ||||||||| || |||| | |  ||||| ||||||| ||| || || | ||||||||    
T  21833506 atcatctcctgcacaagctcctctttagtcatctcttcctgcatggccacaacattatcagccacctgcacgacatccctgatgattgtcaatgtgtcag 21833407  T
Q  286 g 286  Q
    |    
T  21833406 g 21833406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 20725616 - 20725491
Alignment:
Q  95 taatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcc 194  Q
    |||| ||||||||||||||  ||||||   |||||||  | || || ||||||||||| |||||  |||||||||||||| | | ||||| |||| ||||    
T  20725616 taattaaccctgctgcctacgatgcctatgccccctgtgctgcatgacaatctgatacataagggcagggcgaccagtactgccaatccggatcatctcc 20725517  T
Q  195 tggacaatctcctctttagtcatctc 220  Q
    || || | ||||||||||||||||||    
T  20725516 tgcacgagctcctctttagtcatctc 20725491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 26172783 - 26172682
Alignment:
Q  136 gcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccac 235  Q
    |||||||||||| ||||||||||  |||||||||||||| | | ||||| || | |||||| || | |||| ||||||||||||| || ||| |||||||    
T  26172783 gcctggcaatctaatacgtaagggcagggcgaccagtactgccaatccggataatctcctgcaccagctccgctttagtcatctctgcctgcatggccac 26172684  T
Q  236 aa 237  Q
    ||    
T  26172683 aa 26172682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 15738124 - 15738170
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac 63  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||    
T  15738124 tcatagaaatactaaaatgtacgaaacatgtcataataatacatcac 15738170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 4174978 - 4174935
Alignment:
Q  20 tagaaataccaaaatgtacggaacatgtcataattatacatcac 63  Q
    ||||||||  ||||||||| ||||||||||||||||||||||||    
T  4174978 tagaaataagaaaatgtacagaacatgtcataattatacatcac 4174935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 40612757 - 40612816
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaa-tgtacggaacatgtcataattatacatca 62  Q
    |||||| | ||| |||||||||||| |||| |||| ||||||||||||||||||||||||    
T  40612757 atgtcggaaaatgtcatagaaatacgaaaaatgtatggaacatgtcataattatacatca 40612816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 7e-77; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 5620514 - 5620242
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaagtacatnnnnnnn---gcctaatcataatcaaccctgctgccta 113  Q
    ||||| ||||| ||||||||||||||  |||||||||||||||||| ||| |||||||||||          ||||||||||||||||||||||||||||    
T  5620514 tcatacaaatatcaaaatgtacggaatgtgtcataattatacatcatagtaaaaaagtacataaaaaaaaaagcctaatcataatcaaccctgctgccta 5620415  T
Q  114 gcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttag 213  Q
    |||||||||| | |||||| |||||||||||||||||||||||||  |||||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  5620414 gcatgcctcggctccctgcgccgcctggcaatctgatacgtaagggcagggcgactagtatcggctatccgcatcacctcctggacaatctcttctttag 5620315  T
Q  214 tcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||||||| ||||| ||| |||||||||| ||| |||||||||||||||| ||||| ||| | |||||||||||    
T  5620314 tcatctcggcttgtctgtccacaatatcgtcaactatatgcaccacatctcggatgatcatcagtgtgtcagg 5620242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 285
Target Start/End: Complemental strand, 33523650 - 33523360
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnngcctaatca 94  Q
    |||||| | ||| |||||||||||| ||||||||||||||||||||||||||||||||||         |||| ||||||||||       |||||||||    
T  33523650 atgtcggaaaatgtcatagaaatacgaaaatgtacggaacatgtcataattatacatcaccataatcatagtccaaaagtacataaaaaaagcctaatca 33523551  T
Q  95 taatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcc 194  Q
    ||||||||||| ||| ||| | |||| |  |||||||| |||||| ||||||||||| ||||||  |||||| ||||||| |||||| || |||||||||    
T  33523550 taatcaaccctactgtctaccctgccgctgccccctgcgccgcctagcaatctgatatgtaagggcagggcggccagtactggctattcgtatcacctcc 33523451  T
Q  195 tggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    |||||||||||||| |||||||||||  ||| |||||||||||||||||||  ||||||||||||||||||||| ||||| ||||||||||    
T  33523450 tggacaatctcctccttagtcatctcgtctttcctggccacaatatcatcagttatatgcaccacatcccggatgatcgtcagtgtgtcag 33523360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 19268673 - 19268951
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac---------agtcaaaaagtacatnnnnnnn--gcctaatcataatcaaccct 105  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||         ||||||||| |||||         ||||||||| ||||||||||    
T  19268673 tcatagaaatacgaaaatgtacggaacatgtcataattatacatcaccatcatcatagtcaaaaaatacataaaaaaaaagcctaatcagaatcaaccct 19268772  T
Q  106 gctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctc 205  Q
    |||||||| ||||||||  |||||||| |||||||||||||||||||||| ||  |||||||||||||| ||||||| | |||||||| |||||||||||    
T  19268773 gctgcctaccatgcctctgccccctgcgccgcctggcaatctgatacgtatgggcagggcgaccagtactggctatctgaatcacctcttggacaatctc 19268872  T
Q  206 ctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtca 284  Q
    ||||||| |||||||  | | ||| ||||||||||||||| |||||||||||||||| | ||| ||||| |||||||||    
T  19268873 ctctttaatcatctcgtcgttccttgccacaatatcatcagctatatgcaccacatctcagatgatcgtcagtgtgtca 19268951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 2946241 - 2946159
Alignment:
Q  204 tcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||||    
T  2946241 tcctctttagtcatctcggcttgcctggccacaatatcatcaactatatgcaccacatcccggatgattgtcagtgtgtcagg 2946159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 86 - 268
Target Start/End: Complemental strand, 23058828 - 23058643
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaagg---atagggcgaccagtaccggctatc 182  Q
    ||||||| | ||||||||||||||||||  |||||||  || ||||| |  ||||| |||| |||||||||||     |||||||||||||  | | |||    
T  23058828 gcctaataagaatcaaccctgctgcctacgatgcctctgccacctgcgctacctggaaatccgatacgtaagggcagcagggcgaccagtagtgccaatc 23058729  T
Q  183 cgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggat 268  Q
    || | |||||| || |||||||||||||||||||||||| |   | ||||||||||||||||| |||| ||||||||||| |||||    
T  23058728 cgaaacacctcatgaacaatctcctctttagtcatctcaccgctcatggccacaatatcatcagctatctgcaccacatctcggat 23058643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 33522390 - 33522512
Alignment:
Q  163 ggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatc 262  Q
    |||||| ||||||| |||| ||||| |||||||||| |||||||| |||||||   || || |  ||||| |||||||||||| ||||||||||||||||    
T  33522390 ggcgactagtaccgactattcgcataacctcctggaaaatctcctttttagtcccgtcggcctttctggcaacaatatcatcagctatatgcaccacatc 33522489  T
Q  263 ccggatcatcgttagtgtgtcag 285  Q
     ||||| ||| | | ||||||||    
T  33522490 tcggatgatcttcaatgtgtcag 33522512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 2946332 - 2946286
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac 63  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||    
T  2946332 tcatagaaataccaaaatatacggaacatgtcataattatatatcac 2946286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 86 - 285
Target Start/End: Original strand, 2965 - 3164
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    ||||||||||||||||||||| ||||||||| |||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||| |||||||    
T  2965 gcctaatcataatcaaccctgttgcctagcacgcctcggccccctgcgccgcctggcaatctgatacgtaagggcagggcgaccagtaccggatatccgc 3064  T
Q  186 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||||||||||||| | ||| | ||||||||||||||    
T  3065 atcacctcctggacaatctcctctttagtcatctcggtttgcctggctacaatatcatcagctatatgcaccacatctcagatgaccgttagtgtgtcag 3164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 2890 - 2923
Alignment:
Q  30 aaaatgtacggaacatgtcataattatacatcac 63  Q
    ||||||||||||||||||||||||||||||||||    
T  2890 aaaatgtacggaacatgtcataattatacatcac 2923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 54602476 - 54602748
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcacagtcaaaaa-gtacatnnnnnnngcc--taatcataatcaaccctgctgccta 113  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||          |  ||||  |||||||||||||||||||    
T  54602476 tcatacaaataccaaaatgtatggaacatgtcataattatacatcacagtaaaaaaagtacaaaaaaaaaaaccttaattttaatcaaccctgctgccta 54602575  T
Q  114 gcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttag 213  Q
    |||||||||| |||||||| |||||||||||||| ||||||||||  |||||||||||||||  | ||| ||||||||||||||||||| ||||||||||    
T  54602576 gcatgcctcggccccctgcgccgcctggcaatctaatacgtaagggcagggcgaccagtaccaacaatctgcatcacctcctggacaatttcctctttag 54602675  T
Q  214 tcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcagg 286  Q
    ||||||| ||||||||  |||||||||| ||| |||||||||||||||||||||| ||||| |||||||||||    
T  54602676 tcatctcggcttgcctaaccacaatatcgtcagctatatgcaccacatcccggatgatcgtcagtgtgtcagg 54602748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 86 - 284
Target Start/End: Original strand, 39388810 - 39389008
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    |||||||||||||||||||| |||||||||||||||   |||||| | || ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  39388810 gcctaatcataatcaaccctactgcctagcatgccttagccccctacgccacctggcaatctgatacgtaaggtcagggcgaccagtaccggctatccgc 39388909  T
Q  186 atcacctcctggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtca 284  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||||||||  |||||| |||||||||||||| ||||| |||||||||    
T  39388910 atcacctcctgaacaatctcctctttagtcatcccggcttgcctgaccacaatatcatcagttatatgtaccacatcccggatgatcgtcagtgtgtca 39389008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 4 - 281
Target Start/End: Original strand, 12024793 - 12025078
Alignment:
Q  4 atgtcgaagaatatcatagaaataccaaaatgtacggaacatgtcataattatacatcac--------agtcaaaaagtacatnnnnnnngcctaatcat 95  Q
    |||||| | ||| ||||| |||||  ||||||||  ||||||||||||||||||||||||        |||||||||||||||        |||||||||    
T  12024793 atgtcggaaaatgtcatataaataaaaaaatgtatagaacatgtcataattatacatcaccatgatcaagtcaaaaagtacataaaaaaatcctaatcat 12024892  T
Q  96 aatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcct 195  Q
    | | |||| |||| ||| |||||||||| |||||||  |||||||| ||||||||||||||||  ||||||||||||||||| |||||||||||||||||    
T  12024893 agttaaccatgcttcctggcatgcctcggccccctgtgccgcctggtaatctgatacgtaagggcagggcgaccagtaccgggtatccgcatcacctcct 12024992  T
Q  196 ggacaatctcctctttagtcatctcagcttgcctggccacaatatcatcatctatatgcaccacatcccggatcatcgttagtgtg 281  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||||| ||| | ||||||    
T  12024993 ggacaatctcctctttagtcatctcggctttcctggccacaatatcgtcatctatatgcaccacatctcggatgatcatcagtgtg 12025078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 285
Target Start/End: Original strand, 16347123 - 16347272
Alignment:
Q  136 gcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccac 235  Q
    ||||||||||| |||| ||||||  | |||||||||||  | | ||||  ||||||||||| |||||||||||||||||||||||  |   |||||||||    
T  16347123 gcctggcaatccgatatgtaagggcaaggcgaccagtagtgccaatccaaatcacctcctgaacaatctcctctttagtcatctcgccgctcctggccac 16347222  T
Q  236 aatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    |||||||||| |||| ||||||| || |||||| ||||| ||||||||||    
T  16347223 aatatcatcagctatctgcaccatattccggatgatcgtcagtgtgtcag 16347272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 39388727 - 39388773
Alignment:
Q  17 tcatagaaataccaaaatgtacggaacatgtcataattatacatcac 63  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||    
T  39388727 tcatagaaataagaaaatgtacgaaacatgtcataattatacatcac 39388773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 285
Target Start/End: Complemental strand, 45738 - 45589
Alignment:
Q  136 gcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcctggacaatctcctctttagtcatctcagcttgcctggccac 235  Q
    ||||||||||| |||| ||||||  | |||||||||||  | | ||||  ||||||||||| |||||||||||||||||||||||  |   |||||||||    
T  45738 gcctggcaatccgatatgtaagggcaaggcgaccagtagtgccaatccaaatcacctcctgaacaatctcctctttagtcatctcgccgctcctggccac 45639  T
Q  236 aatatcatcatctatatgcaccacatcccggatcatcgttagtgtgtcag 285  Q
    |||||||||| |||| ||||||| || |||||| ||||| ||||||||||    
T  45638 aatatcatcagctatctgcaccatattccggatgatcgtcagtgtgtcag 45589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 5552 - 5433
Alignment:
Q  86 gcctaatcataatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgc 185  Q
    ||||||| ||||||| |||||||||||| | ||||||  |||||||| |||||| ||||||| ||| ||||||  |||||||| |||||  |||||||||    
T  5552 gcctaataataatcagccctgctgcctaccttgcctctgccccctgcgccgcctagcaatctaataagtaagggcagggcgactagtactagctatccgc 5453  T
Q  186 atcacctcctggacaatctc 205  Q
    |||||||||||||| |||||    
T  5452 atcacctcctggacgatctc 5433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 29445 - 29320
Alignment:
Q  95 taatcaaccctgctgcctagcatgcctcgaccccctgcaccgcctggcaatctgatacgtaaggatagggcgaccagtaccggctatccgcatcacctcc 194  Q
    |||| ||||||||||||||  ||||||   |||||||  | || || ||||||||||| |||||  |||||||||||||| | | ||||| |||| ||||    
T  29445 taattaaccctgctgcctacgatgcctatgccccctgtgctgcatgacaatctgatacataagggcagggcgaccagtactgccaatccggatcatctcc 29346  T
Q  195 tggacaatctcctctttagtcatctc 220  Q
    || || | ||||||||||||||||||    
T  29345 tgcacgagctcctctttagtcatctc 29320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3603 times since January 2019
Visitors: 6174