View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_high_107 (Length: 312)
Name: NF0856_high_107
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_107 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 31059425 - 31059725
Alignment:
| Q |
1 |
tcatcaccgtccattcccacaacctctggccactcattcttccctaaagtaaaataatcattaaaattcaatattagtaagca--tgtacacataataca |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31059425 |
tcatcaccgtccattcccacaacctctggccactcattcttccctaaagtaaaataatcattaaaattcaatattagtaagcacatgtacacataataca |
31059524 |
T |
|
| Q |
99 |
attatatctatagattatagaattcaatccctatagtacttgcattcaatcaacttatattaaaaaatacagcatattatatgaatgattacctaaacat |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
31059525 |
attatatctatagattatagaattcaatccctatagtacttgcattcaatcaacttatattaaaaaatacagcatattatatgtacgattacctaaacat |
31059624 |
T |
|
| Q |
199 |
cgaccttcatccctcctcattttgctttatatgttgtttttcactaaataccttatatagagcaggctcgtgttatatataatatattttaatttgggtc |
298 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
31059625 |
cgaccttcatccctcctcattctgctttatatgttgcttttcactcaataccttatatagagcaggctcgtgttataaataatattttttaatttgggtc |
31059724 |
T |
|
| Q |
299 |
t |
299 |
Q |
| |
|
| |
|
|
| T |
31059725 |
t |
31059725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 31068184 - 31068363
Alignment:
| Q |
123 |
caatccctatagtacttgcattcaatcaacttatattaaaaaatacagcatattatatgaatgattacctaaacatcgaccttcatccctcctcattttg |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | || || || |
|
|
| T |
31068184 |
caatccctatagtacttgcattcaatcaacttaaattaaaaaatacagcatattatatgtatgattacctaaacatcgaccttccattttgct-tttctg |
31068282 |
T |
|
| Q |
223 |
ctttatatgttgtttttcactaaataccttatatagagcaggctcgtgt----tatatataatatattttaatttgggtct |
299 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
31068283 |
ctttatatgttgcttttcactcaataccttatatagagcaggctcgtgttatatatatataatataatttaatttgggtct |
31068363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31068101 - 31068185
Alignment:
| Q |
1 |
tcatcaccgtccattcccacaacctctggccactcattcttccctaaagtaaaataatcattaaaattcaatattagtaagcatgtaca |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31068101 |
tcatcaccgtccattcccacaacctctggccatttattcttccctaaagta----aatcattaaaattcaatattagtaagcatgtaca |
31068185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3663 times since January 2019
Visitors: 6174