View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_108 (Length: 311)
Name: NF0856_high_108
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_108 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 85 - 311
Target Start/End: Complemental strand, 16427128 - 16426902
Alignment:
| Q |
85 |
acatcatcagaaccaaaagaagataacaaattctcaaactcatcttccataacaccttcaacatcccacaaaacaccgtccattttcacaaacgaatcat |
184 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16427128 |
acatcatctgaaccaaaagaagataacaaattctcaaactcatcttccataacaccttcaacatcccacaaaacaccgtccattttcacaaacgaatcat |
16427029 |
T |
|
| Q |
185 |
caatcgttacactgttcctccacggcggattactaccgtttcccttcaaaaacctcccacaacgactactcagctttacctgaaacccgtcacgtattgg |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
16427028 |
caatcgttacactgttcctccacggcggattactaccgtttcccttcaaaaacctcccacaacaactcctcagctttacctgaaacccgtcacgtattgg |
16426929 |
T |
|
| Q |
285 |
ttgccattcgtttttaccatctacacc |
311 |
Q |
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||||||||||||||||||||||||||| |
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| T |
16426928 |
ttgccattcgtttttaccatctacacc |
16426902 |
T |
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