View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_110 (Length: 309)

Name: NF0856_high_110
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_110
NF0856_high_110
[»] chr2 (1 HSPs)
chr2 (88-288)||(5676866-5677067)
[»] chr3 (3 HSPs)
chr3 (147-285)||(41507826-41507964)
chr3 (232-281)||(25030570-25030620)
chr3 (232-288)||(8676331-8676388)
[»] chr7 (3 HSPs)
chr7 (153-288)||(2994542-2994679)
chr7 (206-278)||(16378663-16378736)
chr7 (233-266)||(2476617-2476650)
[»] chr1 (2 HSPs)
chr1 (233-288)||(29241546-29241601)
chr1 (232-268)||(1972310-1972346)
[»] scaffold0501 (1 HSPs)
scaffold0501 (179-285)||(9742-9848)
[»] chr6 (1 HSPs)
chr6 (147-262)||(29890570-29890686)
[»] chr8 (2 HSPs)
chr8 (233-266)||(19452490-19452523)
chr8 (233-266)||(19528553-19528586)
[»] chr5 (1 HSPs)
chr5 (153-233)||(15816732-15816812)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 88 - 288
Target Start/End: Complemental strand, 5677067 - 5676866
Alignment:
Q  88 catgagagccatttcttttagttttaggaatattttgagcatctcactcttttccttcatggatcgtaatcttcctttgcaaactcaaaattcttctatt 187  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5677067 catgagagccatttcttatagttttaggaatattttgagcatctcactcttttccttcatggatcgtaatcttcctttgcaaactcaaaattcttctatt 5676968  T
Q  188 gattattgcaactatgcattcattcatttcttctcttatttcta-ttttgtgtttaagctcatcatgagctaaacccctttttggttaagacatgatgat 286  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5676967 gattattgcaactatgctttcattcatttcttctcttatttctatttttgtgtttaagctcatcatgagctaaacccctttttggttaagacatgatgat 5676868  T
Q  287 gt 288  Q
    ||    
T  5676867 gt 5676866  T

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Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 285
Target Start/End: Complemental strand, 41507964 - 41507826
Alignment:
Q  147 tggatcgtaatcttcctttgcaaactcaaaattcttctattgattattgcaactatgcattcattcatttcttctcttatttctattttgtgtttaagct 246  Q
    ||||| ||||| ||| |||| |||||  ||| ||||||||||||||||  || ||||  |||||||| ||||| ||||||||||||||| ||||||||||    
T  41507964 tggattgtaatattcttttgtaaactttaaactcttctattgattattataattatgttttcattcacttcttatcttatttctattttttgtttaagct 41507865  T
Q  247 catcatgagctaaacccctttttggttaagacatgatga 285  Q
    ||||||||||||| || |||  ||||||| |||||||||    
T  41507864 catcatgagctaacccgcttggtggttaatacatgatga 41507826  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 25030620 - 25030570
Alignment:
Q  232 ttttgtgtttaagctcatcatgagctaaaccccttt-ttggttaagacatg 281  Q
    ||||||||||||| |||||||||| |||||||||||  |||||||||||||    
T  25030620 ttttgtgtttaagttcatcatgagataaacccctttagtggttaagacatg 25030570  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 8676331 - 8676388
Alignment:
Q  232 ttttgtgtttaagctcatcatgagctaaacccctttt-tggttaagacatgatgatgt 288  Q
    ||||||||||||   |||||||||||||||| ||||| ||||| ||||||||||||||    
T  8676331 ttttgtgtttaataccatcatgagctaaaccacttttatggttgagacatgatgatgt 8676388  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 288
Target Start/End: Original strand, 2994542 - 2994679
Alignment:
Q  153 gtaatcttcctttgcaaactcaaaattcttctattgattattgcaactatgcattcattcatttcttctcttatttctatttt-gtgtttaagctcatca 251  Q
    ||||| |||||||| ||| || ||| | ||||||| || ||||||| ||||  |||||||| || ||||||  |||| ||||| ||||||||||||||||    
T  2994542 gtaatattcctttgtaaattctaaactattctattaatcattgcaattatgttttcattcagttattctctattttccatttttgtgtttaagctcatca 2994641  T
Q  252 tgagctaaaccccttt-ttggttaagacatgatgatgt 288  Q
    |||| |||| ||||||  | ||||||||||||||||||    
T  2994642 tgaggtaaatccctttaatagttaagacatgatgatgt 2994679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 16378736 - 16378663
Alignment:
Q  206 ttcattcatttcttctcttatttctatttt-gtgtttaagctcatcatgagctaaacccctttttggttaagac 278  Q
    |||||||| ||||| ||||| ||||||||| |||||||| |||||||||||||||||| |||||||||| ||||    
T  16378736 ttcattcacttcttatcttacttctatttttgtgtttaatctcatcatgagctaaaccactttttggttgagac 16378663  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 2476650 - 2476617
Alignment:
Q  233 tttgtgtttaagctcatcatgagctaaacccctt 266  Q
    |||||| |||||||||||||||||||||||||||    
T  2476650 tttgtggttaagctcatcatgagctaaacccctt 2476617  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 29241601 - 29241546
Alignment:
Q  233 tttgtgtttaagctcatcatgagctaaacccctttttggttaagacatgatgatgt 288  Q
    ||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||    
T  29241601 tttgtgtttaatctcatcatgaggtaaaaccctttgtggttaagacatgatgatgt 29241546  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 1972310 - 1972346
Alignment:
Q  232 ttttgtgtttaagctcatcatgagctaaacccctttt 268  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  1972310 ttttgtggttaagctcatcatgagctaagcccctttt 1972346  T

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Target: scaffold0501 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 9848 - 9742
Alignment:
Q  179 tcttctattgattattgcaactatgcattcattcatttcttctcttatttctattttgtgtttaagctcatcatgagctaaacccctttttggttaagac 278  Q
    ||||||||| |||||||||| ||    ||||||||||||||| | | || | ||||||| |||||| |||||||||||||||||| ||  | ||||||||    
T  9848 tcttctattaattattgcaattacattttcattcatttcttcccattttccaattttgtatttaagatcatcatgagctaaaccctttcgtcgttaagac 9749  T
Q  279 atgatga 285  Q
    |||||||    
T  9748 atgatga 9742  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 29890570 - 29890686
Alignment:
Q  147 tggatcgtaatcttcctttgcaaactcaaaattcttctattgattattgcaactatgcattcattcatttcttctcttatttct-attttgtgtttaagc 245  Q
    ||||| ||||| ||||| ||||||||| ||||||||||||  ||||||| |  ||||  ||||||||||| || |  ||||| |  ||||| ||||||||    
T  29890570 tggattgtaatattcctatgcaaactctaaattcttctatcaattattgtagttatgttttcattcattttttataatatttttgtttttgcgtttaagc 29890669  T
Q  246 tcatcatgagctaaacc 262  Q
    || ||||||||||||||    
T  29890670 tcgtcatgagctaaacc 29890686  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 19452523 - 19452490
Alignment:
Q  233 tttgtgtttaagctcatcatgagctaaacccctt 266  Q
    |||||| |||||||||||||||||||||||||||    
T  19452523 tttgtggttaagctcatcatgagctaaacccctt 19452490  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 19528553 - 19528586
Alignment:
Q  233 tttgtgtttaagctcatcatgagctaaacccctt 266  Q
    |||||| |||||||||||||||||||||||||||    
T  19528553 tttgtggttaagctcatcatgagctaaacccctt 19528586  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 15816812 - 15816732
Alignment:
Q  153 gtaatcttcctttgcaaactcaaaattcttctattgattattgcaactatgcattcattcatttcttctcttatttctatt 233  Q
    |||||||| ||||| || ||| ||| |  |||||| |||||||||| ||||  ||||||||||  ||||||||||||||||    
T  15816812 gtaatcttgctttgtaatctctaaactactctattaattattgcaattatgttttcattcattctttctcttatttctatt 15816732  T

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