View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_129 (Length: 284)

Name: NF0856_high_129
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_129
NF0856_high_129
[»] chr1 (7 HSPs)
chr1 (16-284)||(40394703-40394971)
chr1 (243-284)||(40304099-40304140)
chr1 (217-284)||(7218092-7218160)
chr1 (217-268)||(25479581-25479633)
chr1 (256-284)||(17628583-17628611)
chr1 (217-284)||(33723400-33723468)
chr1 (216-248)||(33975591-33975623)
[»] chr8 (9 HSPs)
chr8 (216-275)||(8060662-8060722)
chr8 (222-281)||(10075574-10075634)
chr8 (251-284)||(10076329-10076362)
chr8 (216-268)||(27028831-27028884)
chr8 (252-284)||(9699985-9700017)
chr8 (217-268)||(13459645-13459697)
chr8 (216-283)||(30013203-30013271)
chr8 (217-268)||(30277263-30277315)
chr8 (217-268)||(31862493-31862545)
[»] chr6 (3 HSPs)
chr6 (217-284)||(31671092-31671160)
chr6 (217-284)||(281866-281934)
chr6 (251-283)||(4247114-4247146)
[»] chr5 (8 HSPs)
chr5 (217-283)||(16328851-16328917)
chr5 (216-284)||(31688024-31688092)
chr5 (217-284)||(41957469-41957537)
chr5 (217-267)||(17258901-17258952)
chr5 (219-268)||(3237093-3237143)
chr5 (217-281)||(8985648-8985713)
chr5 (217-284)||(10272449-10272517)
chr5 (217-268)||(11707055-11707107)
[»] chr2 (9 HSPs)
chr2 (216-281)||(43985020-43985086)
chr2 (216-268)||(9174815-9174868)
chr2 (217-284)||(22681203-22681271)
chr2 (220-283)||(33256725-33256789)
chr2 (217-274)||(4026811-4026869)
chr2 (251-284)||(7937005-7937038)
chr2 (224-268)||(10884546-10884591)
chr2 (251-284)||(15377749-15377782)
chr2 (217-281)||(41950054-41950119)
[»] chr7 (7 HSPs)
chr7 (217-284)||(38010698-38010766)
chr7 (214-284)||(21453278-21453349)
chr7 (217-283)||(27378846-27378913)
chr7 (217-283)||(31338493-31338560)
chr7 (217-282)||(4966142-4966208)
chr7 (251-284)||(25296968-25297001)
chr7 (217-284)||(7521256-7521324)
[»] chr4 (5 HSPs)
chr4 (217-279)||(11264290-11264353)
chr4 (217-268)||(6978980-6979032)
chr4 (216-283)||(36722686-36722754)
chr4 (217-268)||(47800623-47800675)
chr4 (126-198)||(55870262-55870334)
[»] chr3 (5 HSPs)
chr3 (217-283)||(20502086-20502153)
chr3 (251-284)||(20874357-20874390)
chr3 (216-284)||(52618987-52619056)
chr3 (217-284)||(1217818-1217886)
chr3 (217-284)||(33306741-33306809)
[»] scaffold0020 (1 HSPs)
scaffold0020 (217-278)||(159991-160053)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 40394703 - 40394971
Alignment:
Q  16 atcacatgattattaatcacaacaaagaacaataccccaaataattacaaagcatgaaaataaaggtcttagattaaggaagtggctgcaagaaacgaag 115  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40394703 atcacatgattattaatcacaaaaaagaacaataccccaaataattacaaagcatgaaaataaaggtcttagattaaggaagtggctgcaagaaacgaag 40394802  T
Q  116 atcggcgttcgtttgaattgacttgtttaaatttatctaatgaaataatcatttgcgagactgtttgagatagtttataaaaatatgacatgtcggatcc 215  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40394803 attggtgttcgtttgaattgacttgtttaaatttatctaatgaaataatcatttgcgagactgtttgagatagtttataaaaatatgacatgtcggatcc 40394902  T
Q  216 attttcagcttattttcataagctctataggatggttatgaaaacagcttataatttatatgaaaacaa 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40394903 attttcagcttattttcataagctctataggatggttatgaaaacaacttataatttatatgaaaacaa 40394971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 40304099 - 40304140
Alignment:
Q  243 taggatggttatgaaaacagcttataatttatatgaaaacaa 284  Q
    |||||| |||||||||||||||||||| ||||||||||||||    
T  40304099 taggatagttatgaaaacagcttataacttatatgaaaacaa 40304140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 7218092 - 7218160
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttataatttatatgaaaacaa 284  Q
    |||||| |||||||||||||| |||  ||||| ||||||||||||| ||||||  ||||||||||||||    
T  7218092 ttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagcttatatgaaaacaa 7218160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 25479633 - 25479581
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttata 268  Q
    ||||||||||||||||||||||||| |||||| | ||||||||||| ||||||    
T  25479633 ttttcagcttattttcataagctctctaggatagcttatgaaaacaacttata 25479581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 284
Target Start/End: Complemental strand, 17628611 - 17628583
Alignment:
Q  256 aaaacagcttataatttatatgaaaacaa 284  Q
    |||||||||||||||||||||||||||||    
T  17628611 aaaacagcttataatttatatgaaaacaa 17628583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 33723400 - 33723468
Alignment:
Q  217 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttataatttatatgaaaacaa 284  Q
    |||||||||||||| |||||||| || ||| | | |||||||||||| | ||| |||||||||||||||    
T  33723400 ttttcagcttatttccataagctttacagggtagcttatgaaaacagttcatagtttatatgaaaacaa 33723468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 33975623 - 33975591
Alignment:
Q  216 attttcagcttattttcataagctctataggat 248  Q
    |||||||||||||||||||||||||| ||||||    
T  33975623 attttcagcttattttcataagctctctaggat 33975591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 8060722 - 8060662
Alignment:
Q  216 attttcagcttattttcataagctctatagga-tggttatgaaaacagcttataatttata 275  Q
    ||||||||||||||| |||||||||| ||||| || ||||||||||||||||||| |||||    
T  8060722 attttcagcttatttccataagctctctaggattgcttatgaaaacagcttataagttata 8060662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 10075574 - 10075634
Alignment:
Q  222 agcttattttcataagctctataggat-ggttatgaaaacagcttataatttatatgaaaa 281  Q
    |||||||||||||||||||| |||||| | ||||||||| ||||||||| |||||| ||||    
T  10075574 agcttattttcataagctctctaggatagcttatgaaaatagcttataacttatataaaaa 10075634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 10076329 - 10076362
Alignment:
Q  251 ttatgaaaacagcttataatttatatgaaaacaa 284  Q
    ||||| ||||||||||||||||||||||||||||    
T  10076329 ttatgcaaacagcttataatttatatgaaaacaa 10076362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 27028884 - 27028831
Alignment:
Q  216 attttcagcttattttcataagctctataggat-ggttatgaaaacagcttata 268  Q
    ||||||||||||||||||||||||||  | ||| | ||||||||||||||||||    
T  27028884 attttcagcttattttcataagctctccaagatagcttatgaaaacagcttata 27028831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 9700017 - 9699985
Alignment:
Q  252 tatgaaaacagcttataatttatatgaaaacaa 284  Q
    ||||||||||||||||||||||| |||||||||    
T  9700017 tatgaaaacagcttataatttatttgaaaacaa 9699985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 13459697 - 13459645
Alignment:
Q  217 ttttcagcttattttcataagctctataggatg-gttatgaaaacagcttata 268  Q
    |||||||| |||||||||||||||| |||||||  ||||||||||| ||||||    
T  13459697 ttttcagcctattttcataagctctgtaggatgatttatgaaaacaacttata 13459645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 30013271 - 30013203
Alignment:
Q  216 attttcagcttattttcataagctctataggatgg-ttatgaaaacagcttataatttatatgaaaaca 283  Q
    ||||||||||||||| ||| || |||| ||||| | ||||||||||||||||||  ||||||| |||||    
T  30013271 attttcagcttatttccattagttctacaggatagcttatgaaaacagcttatagcttatatggaaaca 30013203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 30277263 - 30277315
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttata 268  Q
    |||||||||||||| ||||| |||| |||||| | ||||||||||||||||||    
T  30277263 ttttcagcttatttccataaactctctaggatagcttatgaaaacagcttata 30277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 31862545 - 31862493
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttata 268  Q
    ||||||||||||||||||||||||| ||||||   ||||||||||| ||||||    
T  31862545 ttttcagcttattttcataagctctctaggataacttatgaaaacatcttata 31862493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 31671092 - 31671160
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttataatttatatgaaaacaa 284  Q
    ||||||||||||||||||||||| | |||||| | ||| ||||||||||||||  ||||||||||||||    
T  31671092 ttttcagcttattttcataagctatctaggatagtttacgaaaacagcttatagcttatatgaaaacaa 31671160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 281866 - 281934
Alignment:
Q  217 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttataatttatatgaaaacaa 284  Q
    |||||||||||||| ||| |||||| |||||| | ||||||| ||||||||||  ||||||||||||||    
T  281866 ttttcagcttatttccatgagctctctaggatagcttatgaacacagcttatagcttatatgaaaacaa 281934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 4247114 - 4247146
Alignment:
Q  251 ttatgaaaacagcttataatttatatgaaaaca 283  Q
    ||||||||||||||||||| |||||||||||||    
T  4247114 ttatgaaaacagcttataacttatatgaaaaca 4247146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 16328917 - 16328851
Alignment:
Q  217 ttttcagcttattttcataagctctataggatggttatgaaaacagcttataatttatatgaaaaca 283  Q
    |||||||||||||| ||||||||||  |||  | ||| |||||||| ||||||||||||||||||||    
T  16328917 ttttcagcttatttccataagctctccaggtagcttacgaaaacagtttataatttatatgaaaaca 16328851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 31688092 - 31688024
Alignment:
Q  216 attttcagcttattttcataagctctataggatggttatgaaaacagcttataatttatatgaaaacaa 284  Q
    ||||||| ||||||||||||||||||| | ||| | ||||| ||||||||| | ||||||| |||||||    
T  31688092 attttcaacttattttcataagctctacatgatagctatgagaacagcttaaagtttatataaaaacaa 31688024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 41957469 - 41957537
Alignment:
Q  217 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttataatttatatgaaaacaa 284  Q
    |||||| |||||||||||||| |||  ||||| | ||||||||||||||||||| ||| ||||||||||    
T  41957469 ttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataacttacatgaaaacaa 41957537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 17258901 - 17258952
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttat 267  Q
    |||||||||||||||||||||||||  ||||| | |||||||||||||||||    
T  17258901 ttttcagcttattttcataagctcttcaggatagtttatgaaaacagcttat 17258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 3237143 - 3237093
Alignment:
Q  219 ttcagcttattttcataagctctataggat-ggttatgaaaacagcttata 268  Q
    |||||| |||||||||||||||| |||||| | ||||||||||||||||||    
T  3237143 ttcagcatattttcataagctctttaggatagcttatgaaaacagcttata 3237093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 8985713 - 8985648
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttataatttatatgaaaa 281  Q
    |||||||||| ||| ||||||||||||||||| | ||||||||| |||||  || |||||||||||    
T  8985713 ttttcagcttctttccataagctctataggatagcttatgaaaatagcttgcaaattatatgaaaa 8985648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 10272449 - 10272517
Alignment:
Q  217 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttataatttatatgaaaacaa 284  Q
    |||||||||||||||||||| ||||  | ||||| ||||||||||| ||||||  ||||| ||||||||    
T  10272449 ttttcagcttattttcataaactctccaagatggcttatgaaaacaacttatagcttatacgaaaacaa 10272517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 11707107 - 11707055
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttata 268  Q
    ||||||||||||||||| |||||||| | ||| | ||||||||||||||||||    
T  11707107 ttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttata 11707055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 43985020 - 43985086
Alignment:
Q  216 attttcagcttattttcataagctctataggat-ggttatgaaaacagcttataatttatatgaaaa 281  Q
    ||||||||||||||||||||||||||  | ||| | ||||||||||| ||||||||||||| |||||    
T  43985020 attttcagcttattttcataagctcttcaagatagcttatgaaaacaacttataatttatacgaaaa 43985086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 9174868 - 9174815
Alignment:
Q  216 attttcagcttattttcataagctctataggat-ggttatgaaaacagcttata 268  Q
    |||||||||||||||||||||||||| || ||| | ||||||||||||||||||    
T  9174868 attttcagcttattttcataagctctgtaagatagcttatgaaaacagcttata 9174815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 22681203 - 22681271
Alignment:
Q  217 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttataatttatatgaaaacaa 284  Q
    |||| ||||||||| |||||| ||| |||||| | ||||||||||||||||||  ||||||||||||||    
T  22681203 tttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaa 22681271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 283
Target Start/End: Complemental strand, 33256789 - 33256725
Alignment:
Q  220 tcagcttattttcataagctctataggatgg-ttatgaaaacagcttataatttatatgaaaaca 283  Q
    |||||||||||||||| | |||  ||||||| |||||||||| ||||||| ||||||||||||||    
T  33256789 tcagcttattttcatacggtcttcaggatggcttatgaaaactgcttatagtttatatgaaaaca 33256725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 4026869 - 4026811
Alignment:
Q  217 ttttcagcttattttcataagctctataggatggtt-atgaaaacagcttataatttat 274  Q
    ||||||||||||||||||||| |||  |||||  || ||||||||||||||||||||||    
T  4026869 ttttcagcttattttcataagttcttcaggataatttatgaaaacagcttataatttat 4026811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 7937038 - 7937005
Alignment:
Q  251 ttatgaaaacagcttataatttatatgaaaacaa 284  Q
    |||||||||||||||||||| |||||||||||||    
T  7937038 ttatgaaaacagcttataatctatatgaaaacaa 7937005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 10884546 - 10884591
Alignment:
Q  224 cttattttcataagctctataggat-ggttatgaaaacagcttata 268  Q
    |||||||||||||||||| |||||| | ||||||||||||||||||    
T  10884546 cttattttcataagctctctaggatagcttatgaaaacagcttata 10884591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 15377782 - 15377749
Alignment:
Q  251 ttatgaaaacagcttataatttatatgaaaacaa 284  Q
    ||||||||||||||||||| ||||||||||||||    
T  15377782 ttatgaaaacagcttataacttatatgaaaacaa 15377749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 41950119 - 41950054
Alignment:
Q  217 ttttcagcttattttcataagctctataggatggt-tatgaaaacagcttataatttatatgaaaa 281  Q
    |||| ||||||||||||||||||||||||||| ||  ||| ||||||  |||| ||||||||||||    
T  41950119 ttttaagcttattttcataagctctataggatagtgaatgtaaacaggatatagtttatatgaaaa 41950054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 38010766 - 38010698
Alignment:
Q  217 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttataatttatatgaaaacaa 284  Q
    |||| ||||||||| |||||| ||| |||||| | ||||||||||||||||||  ||||||||||||||    
T  38010766 tttttagcttatttccataagttctctaggatagattatgaaaacagcttatagcttatatgaaaacaa 38010698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 21453349 - 21453278
Alignment:
Q  214 ccattttcagcttattttcataagctctataggat-ggttatgaaaacagcttataatttatatgaaaacaa 284  Q
    ||||||||||||||| ||||| |||||| |||||| | |||||||||||| |||||  |||||||| |||||    
T  21453349 ccattttcagcttatcttcattagctctctaggatagcttatgaaaacagtttatagcttatatgagaacaa 21453278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 27378846 - 27378913
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttataatttatatgaaaaca 283  Q
    ||||||| |||||||||||||||||  ||||| | |||||||||||| || || ||||||||||||||    
T  27378846 ttttcagtttattttcataagctctccaggatagtttatgaaaacagattgtagtttatatgaaaaca 27378913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 31338560 - 31338493
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttataatttatatgaaaaca 283  Q
    |||||| ||||||||||||||||| ||||||| | ||||| ||||| ||||||| |||||| ||||||    
T  31338560 ttttcaccttattttcataagctccataggatagtttatggaaacaacttataacttatataaaaaca 31338493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 4966208 - 4966142
Alignment:
Q  217 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttataatttatatgaaaac 282  Q
    ||||||| |||||| ||||||||||  ||||||| ||||||||||||||||||  | ||||||||||    
T  4966208 ttttcagtttatttccataagctcttcaggatggcttatgaaaacagcttatacctaatatgaaaac 4966142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 25297001 - 25296968
Alignment:
Q  251 ttatgaaaacagcttataatttatatgaaaacaa 284  Q
    |||||||||||||||||| |||||||||||||||    
T  25297001 ttatgaaaacagcttatagtttatatgaaaacaa 25296968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 7521324 - 7521256
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttataatttatatgaaaacaa 284  Q
    ||||||||||||||||| ||||||| |||||| | |||| |||||||||||| | ||  ||||||||||    
T  7521324 ttttcagcttattttcagaagctctctaggatagtttattaaaacagcttatgacttgcatgaaaacaa 7521256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 11264353 - 11264290
Alignment:
Q  217 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttataatttatatgaa 279  Q
    |||||| ||||||| |||||||||| |||||||| ||||||||||| |||||||  ||||||||    
T  11264353 ttttcaacttatttccataagctctctaggatggcttatgaaaacaacttataacatatatgaa 11264290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 6978980 - 6979032
Alignment:
Q  217 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttata 268  Q
    |||||||||||||||||||| |||| |||||||| |||| |||||| ||||||    
T  6978980 ttttcagcttattttcataaactctttaggatggcttataaaaacaacttata 6979032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 36722686 - 36722754
Alignment:
Q  216 attttcagcttattttcataagctctataggat-ggttatgaaaacagcttataatttatatgaaaaca 283  Q
    ||||| ||||||||||||||||||||  |||||   |||| |||||| ||||||| |||||||||||||    
T  36722686 attttaagcttattttcataagctcttcaggataacttatcaaaacaacttataacttatatgaaaaca 36722754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 47800675 - 47800623
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttata 268  Q
    |||||||||||||||||||||||||  | ||| | ||||||||||||||||||    
T  47800675 ttttcagcttattttcataagctcttcaagatagcttatgaaaacagcttata 47800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 55870262 - 55870334
Alignment:
Q  126 gtttgaattgacttgtttaaatttatctaatgaaataatcatttgcgagactgtttgagatagtttataaaaa 198  Q
    ||||| ||| |||| ||| | |||||||||||| |||| |||||| |||||| |||||||||| |||| ||||    
T  55870262 gtttggattaacttatttgagtttatctaatgacataaacatttgtgagactctttgagatagcttatgaaaa 55870334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 20502086 - 20502153
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttataatttatatgaaaaca 283  Q
    ||||||||||||| |||||||||||  ||||| | ||||||||||||||||||   ||||||||||||    
T  20502086 ttttcagcttattctcataagctcttcaggatagcttatgaaaacagcttatagcgtatatgaaaaca 20502153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 20874357 - 20874390
Alignment:
Q  251 ttatgaaaacagcttataatttatatgaaaacaa 284  Q
    |||||||||||||||||| |||||||||||||||    
T  20874357 ttatgaaaacagcttatagtttatatgaaaacaa 20874390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 52619056 - 52618987
Alignment:
Q  216 attttcagcttattttcataagctctataggatgg-ttatgaaaacagcttataatttatatgaaaacaa 284  Q
    ||||||| |||||||||| |||||||  | ||| | || |||||||||||||||| ||||||||||||||    
T  52619056 attttcaccttattttcacaagctcttcaagatagcttgtgaaaacagcttataacttatatgaaaacaa 52618987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 1217818 - 1217886
Alignment:
Q  217 ttttcagcttattttcataagctctataggatgg-ttatgaaaacagcttataatttatatgaaaacaa 284  Q
    |||||| |||| ||||||||| |||  ||||| | ||||||||||||||||||| ||| ||||||||||    
T  1217818 ttttcatcttactttcataagttctcaaggatagcttatgaaaacagcttataacttacatgaaaacaa 1217886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 33306741 - 33306809
Alignment:
Q  217 ttttcagcttattttcataagctctataggatggtt-atgaaaacagcttataatttatatgaaaacaa 284  Q
    ||||| ||||||||| |||| |||||||| || ||| ||||||| ||||||||  ||||||||||||||    
T  33306741 ttttcggcttattttaataatctctatagaattgtttatgaaaatagcttatagcttatatgaaaacaa 33306809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 159991 - 160053
Alignment:
Q  217 ttttcagcttattttcataagctctataggat-ggttatgaaaacagcttataatttatatga 278  Q
    |||||||||||||| || ||||||| |||||| | ||||||||||| ||||||| ||||||||    
T  159991 ttttcagcttatttccacaagctctttaggatagcttatgaaaacatcttataacttatatga 160053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3420 times since January 2019
Visitors: 6174