View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_135 (Length: 275)
Name: NF0856_high_135
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_135 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 5 - 262
Target Start/End: Complemental strand, 42209167 - 42208912
Alignment:
| Q |
5 |
cccacaccagagaggatcctcttctcatatataatcatatacctccttaaggagttttgaatcatttgtttgacaagtaatctctttcccgacatatatt |
104 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42209167 |
cccacaccag-gaggatcctcttctcatatataatcatatacctccttaaggagttttgaatcatttgtttgacaagtaatctctttcccgacatatatt |
42209069 |
T |
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| Q |
105 |
tttctatacgcatcggtcatagatcacttattgctttatttttaccttattctaatgaagcgagaggtgttacgnnnnnnnnnnnnnnnnnnnnnnnnct |
204 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42209068 |
tttctatacgcatcggtcataaatcacttattgctttatttttaccttattctaatgaagcgagaggtgttacgttttttctttcttttgtggtttttct |
42208969 |
T |
|
| Q |
205 |
agattgcccttaaaattcatattcaaagattgaattcaactccaattttgttttcttc |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42208968 |
agattgcccttaaaattcatattcaaagattgaattcaactccaa-tttgttttcttc |
42208912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 42215979 - 42215928
Alignment:
| Q |
211 |
cccttaaaattcatattcaaagattgaattcaactccaattttgttttcttc |
262 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215979 |
cccttgaaattcatattcaaagattgaattcaactccaattttgttttcttc |
42215928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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