View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_high_137 (Length: 270)
Name: NF0856_high_137
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_137 |
 | |
|
| [»] scaffold0831 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 44185396 - 44185620
Alignment:
| Q |
18 |
gttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaatctctcaatcgatttacttgtgctccaaatcatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44185396 |
gttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaat------------------gtgctccaaatcatg |
44185477 |
T |
|
| Q |
118 |
gtctcttttatttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44185478 |
gtctcttttatttcatgcaattgttccacaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatatc |
44185577 |
T |
|
| Q |
218 |
accacatcctcgagacggtttcaatctgtatttgctctctgct |
260 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44185578 |
gccacatcctcgagacggttccaatctgtatttgctctctgct |
44185620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 4875932 - 4876189
Alignment:
| Q |
18 |
gttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaatctctcaatcgatttacttgtgc-tccaaatcat |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
4875932 |
gttagtaaccgtagctatattcccgatgacatttccttttctattctttccaaattacccctccaatctctcaattgatttacatgtgcctccaaatcat |
4876031 |
T |
|
| Q |
117 |
ggtctcttttatttca--------------tgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaa |
202 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||| |
|
|
| T |
4876032 |
cgtctcttttatttcaaaaccctaatttcatgaacatgttccgcaccaatttcatatctatgcatcgatcattgtacgatcacacttatctctttctaaa |
4876131 |
T |
|
| Q |
203 |
tattaaggagatatcaccacatcctcgagacggtttcaatctgtatttgctctctgct |
260 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
4876132 |
tattaaggagatattgccacatccacgagacggttccaatctgtatttgctctctgct |
4876189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 1326351 - 1326563
Alignment:
| Q |
29 |
tagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctctt--- |
124 |
Q |
| |
|
|||||||||| ||||||| ||||| || |||||||||||||||||||| |||||||||||||| |||||||| ||||| | |||| ||| ||||||| |
|
|
| T |
1326351 |
tagctatattgctgatgacatttccttctctattctttccaaattacctctcaaatctctcaaacgatttacgtgtgcatgcaaaccatagtctctttta |
1326450 |
T |
|
| Q |
125 |
-----------ttatttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggaga |
213 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| | ||| |||||||| |||| ||||||||||| ||||| ||||||| |
|
|
| T |
1326451 |
tttcaaaacccttatttcatgcctatgtttcgcaccaatttcatatctatgcattgttcactgtacaatgacacatatctcttccttaatataaaggaga |
1326550 |
T |
|
| Q |
214 |
tatcaccacatcc |
226 |
Q |
| |
|
||| |||||||| |
|
|
| T |
1326551 |
tattgccacatcc |
1326563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 5387524 - 5387781
Alignment:
| Q |
18 |
gttagtaaccgtagctatattcctgatgaaatttcgttttctattctttccaaattacccctcaaatctctcaatcgatttacttgtgc-tccaaatcat |
116 |
Q |
| |
|
||||||||| ||| ||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |
|
|
| T |
5387524 |
gttagtaacagtaactatatttccgatgacatttccttttctattctttccaaattacccctcaaatctctcaatcgatttacctgtgcctccaaatctt |
5387623 |
T |
|
| Q |
117 |
ggtctcttttattt--------------catgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaa |
202 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| ||||| | |
|
|
| T |
5387624 |
ggtctcttttatttcaaaaccctaatttcatgcaattgttccgcaccaatttcatatttatgcatcgctcattgtatgatcacacctttctcatcctata |
5387723 |
T |
|
| Q |
203 |
tattaaggagatatcaccacatcctcgagacggtttcaatctgtatttgctctctgct |
260 |
Q |
| |
|
||| |||||||||| |||||||||| ||| |||| |||||||||||||||||||||| |
|
|
| T |
5387724 |
tataaaggagatattgccacatcctcaagatggttccaatctgtatttgctctctgct |
5387781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 2135 - 2047
Alignment:
| Q |
127 |
atttcatgcaattgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagata |
215 |
Q |
| |
|
|||||||| || |||| |||| ||||||||||| ||||||||| |||||||||||| |||| | ||| ||||||||||| ||||||||| |
|
|
| T |
2135 |
atttcatgaaaatgtttcgcaacaatttcatatttatgcatcgatcattgtacaatgacacatgtcttttcctaaatataaaggagata |
2047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 2211 - 2146
Alignment:
| Q |
66 |
tccaaattacccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttattt |
130 |
Q |
| |
|
|||||| |||| || ||||||||||| |||||||||||||| | ||| |||||||||||||||||| |
|
|
| T |
2211 |
tccaaactacctcttaaatctctcaagcgatttacttgtgcatgcaagtcatggtctcttttattt |
2146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 26531587 - 26531664
Alignment:
| Q |
139 |
tgttccgcaccaatttcatatctatgcatcgctcattgtacaatcacacctatctcttcctaaatattaaggagatat |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||| |||| |||||||| |||||||| |||||||||| |
|
|
| T |
26531587 |
tgttccgcaaaaatttcatatctatgcatcagtcattgtacaacaacacttatctctttctaaatataaaggagatat |
26531664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 27183114 - 27183166
Alignment:
| Q |
81 |
aaatctctcaatcgatttacttgtgct-ccaaatcatggtctcttttatttca |
132 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
27183114 |
aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttca |
27183166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 27231171 - 27231119
Alignment:
| Q |
81 |
aaatctctcaatcgatttacttgtgct-ccaaatcatggtctcttttatttca |
132 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
27231171 |
aaatctctcaagcgatttacttgtgtttccaaatcatggtctcttttatttca |
27231119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 26531509 - 26531564
Alignment:
| Q |
76 |
ccctcaaatctctcaatcgatttacttgtgc-tccaaatcatggtctcttttattt |
130 |
Q |
| |
|
|||||||||||||||| || ||||||||||| | |||||||||||||||||||||| |
|
|
| T |
26531509 |
ccctcaaatctctcaagcggtttacttgtgcgtgcaaatcatggtctcttttattt |
26531564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3216 times since January 2019
Visitors: 6172