View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_high_14 (Length: 607)
Name: NF0856_high_14
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 150 - 594
Target Start/End: Original strand, 18234195 - 18234639
Alignment:
| Q |
150 |
ttcacaaacctgacaaataaacatttgaataccgccttctatgaaaagagttcttcttccaaatttatcaacagtggcgattgaaacgaaagtggcgagt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
18234195 |
ttcacaaacctgacaaataaacatttgaataccgccttctatgaaaagagttcttcttccaaatttatcaacagtggcgattgatacgaaagtggcaagt |
18234294 |
T |
|
| Q |
250 |
gcgttacatcctccggtaatcagggctgacatgagagaagcattgctgctaaagccaatagtcttgaacaaaacaggagcatagaatgtaatcacattca |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18234295 |
gcgttacatcctccggtaatcagggctgacatgagagaagcgttgctgctaaacccaatagtcttgaacaaaacaggagcatagaatgtaatcacattca |
18234394 |
T |
|
| Q |
350 |
tgccggtgagttgctgaaagaacggaatggctattgccatcgtgagatgaggtctatacggtctcgtcaacaaagaggcccaaggatgttccacagtttt |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18234395 |
tgccggtgagttgctgaaagaacggaatggctattgccattgtgagatgaggtctatacggtctcgtcaacaaagaggcccaaggatgttccacagtttt |
18234494 |
T |
|
| Q |
450 |
ggaaatatcactagctgcaaccaaatcttgaaactcctcgtctacatcggttgttccacggatacttatcaattcttttttggctttatcattttgaccg |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18234495 |
tgaaatatcactagctgcaaccaaatcttgaaactcctcgtccacatcggttgttccacggatacttatcaattcttttttggctttatcattttgaccg |
18234594 |
T |
|
| Q |
550 |
cgctcgatcaaagaacttggcgtgtcgggaagaaagattgcacct |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18234595 |
cgctcgatcaaagaacttggcgtgtcgggaagaaagattgcacct |
18234639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 153 - 595
Target Start/End: Complemental strand, 42552011 - 42551569
Alignment:
| Q |
153 |
acaaacctgacaaataaacatttgaataccgccttctatgaaaagagttcttcttccaaatttatcaacagtggcgattgaaacgaaagtggcgagtgcg |
252 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||| | |||||||||||| |
|
|
| T |
42552011 |
acaaacctgacaaatgaacatttgaatacctccttcaatgaaaagagttcttcttccaaatttatcaacagtagcaattgaaacaagagtggcgagtgca |
42551912 |
T |
|
| Q |
253 |
ttacatcctccggtaatcagggctgacatgagagaagcattgctgctaaagccaatagtcttgaacaaaacaggagcatagaatgtaatcacattcatgc |
352 |
Q |
| |
|
||||| ||||| |||| | |||||||| |||||||||| || | ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
42551911 |
ttacaacctccaataattaaggctgacacgagagaagcagtgttactaaagccaatagtcttaaacaaaacaggggcataaaatgtaatcacattcatgc |
42551812 |
T |
|
| Q |
353 |
cggtgagttgctgaaagaacggaatggctattgccatcgtgagatgaggtctatacggtctcgtcaacaaagaggcccaaggatgttccacagttttgga |
452 |
Q |
| |
|
| ||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||||| |||| ||||||||| || |
|
|
| T |
42551811 |
cagtgagttgctggaagaagggaatggctattgccattgtgaggtgaggtctatattgtctcttcaacaaagagacccaagggtgtttcacagtttttga |
42551712 |
T |
|
| Q |
453 |
aatatcactagctgcaaccaaatcttgaaactcctcgtctacatcggttgttccacggatacttatcaattcttttttggctttatcattttgaccgcgc |
552 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||| || || || || |||||||| ||| | |||||||||| ||||||||| ||||||||||| ||| |
|
|
| T |
42551711 |
aacatcactagctacaaccaaatcttgaaactcctcatcaacgtcagtagttccacgcatattaatcaattcttgtttggctttgtcattttgaccacgc |
42551612 |
T |
|
| Q |
553 |
tcgatcaaagaacttggcgtgtcgggaagaaagattgcaccta |
595 |
Q |
| |
|
|| ||||||||||| || | ||||||||| || |||||||||| |
|
|
| T |
42551611 |
tcaatcaaagaactcggtgagtcgggaaggaacattgcaccta |
42551569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 157 - 423
Target Start/End: Original strand, 42518048 - 42518314
Alignment:
| Q |
157 |
acctgacaaataaacatttgaataccgccttctatgaaaagagttcttcttccaaatttatcaacagtggcgattgaaacgaaagtggcgagtgcgttac |
256 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||| ||||| | ||| ||||| |||||||||||||| |||||| | || || || | ||| || | |
|
|
| T |
42518048 |
acctgacaaataaacatttgagctcctccttctaagaatagagtacgtctcccaaacttatcaacagtggcaattgaagcaaacgttgctaatgcattgc |
42518147 |
T |
|
| Q |
257 |
atcctccggtaatcagggctgacatgagagaagcattgctgctaaagccaatagtcttgaacaaaacaggagcatagaatgtaatcacattcatgccggt |
356 |
Q |
| |
|
| |||||||| |||| ||||||||| || |||||||| | ||| || ||||| || |||||||| |||||||| ||||| || ||||||||||| || |
|
|
| T |
42518148 |
agcctccggtgatcatggctgacataagggaagcattagcaccaaatccgatagttttaaacaaaaccggagcataaaatgtgatgacattcatgccagt |
42518247 |
T |
|
| Q |
357 |
gagttgctgaaagaacggaatggctattgccatcgtgagatgaggtctatacggtctcgtcaacaaa |
423 |
Q |
| |
|
||||||||| ||||| ||||| ||| | ||||| || || ||||| |||||| | |||||||||||| |
|
|
| T |
42518248 |
gagttgctggaagaatggaatagctgtggccatggtaagctgaggcctatactgcctcgtcaacaaa |
42518314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 262 - 434
Target Start/End: Original strand, 1239831 - 1240003
Alignment:
| Q |
262 |
ccggtaatcagggctgacatgagagaagcattgctgctaaagccaatagtcttgaacaaaacaggagcatagaatgtaatcacattcatgccggtgagtt |
361 |
Q |
| |
|
||||| |||| ||| |||||||| |||||||| | ||| || ||||| || |||||||| |||||||| ||||| || ||||||||||| ||||||| |
|
|
| T |
1239831 |
ccggttatcatggcagacatgagggaagcattagcaccaaaacctatagttttaaacaaaactggagcataaaatgtgatgacattcatgccagtgagtt |
1239930 |
T |
|
| Q |
362 |
gctgaaagaacggaatggctattgccatcgtgagatgaggtctatacggtctcgtcaacaaagaggcccaagg |
434 |
Q |
| |
|
|||| || || ||||| ||||| ||||| || || ||||| |||||| | |||||||||||| | |||||||| |
|
|
| T |
1239931 |
gctggaataatggaatagctatggccatggtaagttgaggcctatactgcctcgtcaacaaacaagcccaagg |
1240003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 593
Target Start/End: Original strand, 1240086 - 1240162
Alignment:
| Q |
517 |
atcaattcttttttggctttatcattttgaccgcgctcgatcaaagaacttggcgtgtcgggaagaaagattgcacc |
593 |
Q |
| |
|
||||| || ||||| ||||| |||| |||||| | || ||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
1240086 |
atcaactcctttttagctttgtcatcttgacctctttcaatcaatgaacttggcgaatcgggaagaaagattgcacc |
1240162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3411 times since January 2019
Visitors: 6174