View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_151 (Length: 266)
Name: NF0856_high_151
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_151 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 110 - 252
Target Start/End: Original strand, 7710154 - 7710291
Alignment:
| Q |
110 |
taagcacaagcagcaactctattatagcttatccagttaatgagcatccgagttttataatattgactgtaatgatggtcattgtatataatannnnnnn |
209 |
Q |
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| T |
7710154 |
taagcacaagcagcaactctattatagcttatccagttaatgagcatctgagttttataatattgactgtaatgatggtcattgtatataat-----ttt |
7710248 |
T |
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| Q |
210 |
nnnnnngacacaattgtatatatcaaagatgagcacattccgt |
252 |
Q |
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| T |
7710249 |
ttttttgacacaattgtatatatcaaagatgagcacattccgt |
7710291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 7717934 - 7717983
Alignment:
| Q |
152 |
agcatccgagttttataatattgactgtaatgatggtcattgtatataat |
201 |
Q |
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| T |
7717934 |
agcatccaagttttataatattgactgtaatgatagtcattgtatataat |
7717983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 7725100 - 7725149
Alignment:
| Q |
152 |
agcatccgagttttataatattgactgtaatgatggtcattgtatataat |
201 |
Q |
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| T |
7725100 |
agcatccaagttttataatattgactctaatgatggtcattgtatataat |
7725149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 7732509 - 7732558
Alignment:
| Q |
152 |
agcatccgagttttataatattgactgtaatgatggtcattgtatataat |
201 |
Q |
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| T |
7732509 |
agcatccaagttttataatattgaccgtaatgatggtcattgtatataat |
7732558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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