View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_153 (Length: 263)
Name: NF0856_high_153
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_153 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 5159669 - 5159850
Alignment:
| Q |
30 |
caaacttcaaaatttagagagaaaacttagaactaaaagagataaaattggttatacttttccattaattaattctaatgagacagtacaatgctggtat |
129 |
Q |
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| T |
5159669 |
caaacttcaaaatttagagagaaaacttagaactaaaagagataaaattggttatacttttccatta----attctaatgagacagtacaatgctggtat |
5159764 |
T |
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| Q |
130 |
aagttggtgcatactactaggaaaataacaccaattacataataacacctaactaactaataaattatgtgtgagattctctccac |
215 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
5159765 |
aagttggtgcatactagtaggaaaataactccaattacataataacacctaactaactaataaattatgtctaagattctctccac |
5159850 |
T |
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