View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_high_157 (Length: 260)
Name: NF0856_high_157
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_157 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 45642636 - 45642431
Alignment:
| Q |
38 |
aacaccgtcaattctgacacatcaacgccaaatccatgacccatcaacgccaattccgaaacc-tattccccatcgttattcatttcagactaaacaaca |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45642636 |
aacaccgtcaattctgacacatcaacgccaaatccatgacccatcaacgccaattccaaaaccctattccccatcgttattcatttcagactaaacaaca |
45642537 |
T |
|
| Q |
137 |
acaacaa------agaacttgtagttattcaaactcagatctaacgattccaaacccgtaaacgaagtacacgtgccgaacacagctccacaagacacgt |
230 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45642536 |
acaacaacaacaaagaacttgtagttattcaaactcagatctaacgattccaaacacgtaaacgaagtacacgtgccgaacacagctccacaagacacgt |
45642437 |
T |
|
| Q |
231 |
cagtat |
236 |
Q |
| |
|
|||||| |
|
|
| T |
45642436 |
cagtat |
45642431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 43437303 - 43437339
Alignment:
| Q |
153 |
agttattcaaactcagatctaacgattccaaacccgt |
189 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
43437303 |
agttattcgaactcagatctaacaattccaaacccgt |
43437339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3675 times since January 2019
Visitors: 6174