View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_high_165 (Length: 253)
Name: NF0856_high_165
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_165 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 14266606 - 14266830
Alignment:
| Q |
30 |
aagtaccttaccagatagaaaaggcatctactgagatttctgcattcttgagatatccagcaaacagaatcaatgccataaagtaccatgtttccaagct |
129 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14266606 |
aagtaccttaccagatagagaaggcatctactgagatttctgcattcttgagatatccagcaaacagaatcaatgccataaagtaccatgtttccaagct |
14266705 |
T |
|
| Q |
130 |
gcatgaaataaaatgtagaaatatttcttcgttttagcatcgaatacaac-gaatgtgttcatgaaattttagtggcaagaacttgactttataaacttt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14266706 |
gcatgaaataaaatgtagaaatatttcttcgttttagcatcgaatacaacggaatgtgttcatgaaattttagtggcaagaacttgactttataaacttt |
14266805 |
T |
|
| Q |
229 |
aaaatagattgcaggagttattgac |
253 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
14266806 |
aaaatagattgcaggagttattgac |
14266830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 29110653 - 29110732
Alignment:
| Q |
39 |
accagatagaaaaggcatctactgagatttctgcattcttgagatatccagcaaacagaatcaatgccataaagtaccat |
118 |
Q |
| |
|
|||| ||||| || ||||| ||||| | ||||||||||| |||||||||||||| || || ||||||||||| |||||| |
|
|
| T |
29110653 |
accatatagacaatgcatcaactgaaacttctgcattctccagatatccagcaaatagtattaatgccataaaataccat |
29110732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2939 times since January 2019
Visitors: 6168