View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_166 (Length: 253)
Name: NF0856_high_166
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_166 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 4677130 - 4677348
Alignment:
| Q |
30 |
aattattggctcaatttaatgtttgaggttgtttcatgttataatcatagtatattgttgagttgagggagaacatgccattcgtaataagacataattt |
129 |
Q |
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| T |
4677130 |
aattatgggctcaatttaatgtttgaggttgttttatgttataatcatagtatattgttg-----agggagaacatgccattcgtaataagacataattt |
4677224 |
T |
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| Q |
130 |
aagagagtgtcgggtttattttattttagagttttgtaagaaaagggggaaaattatgtacctatatgatacctacttaattaaattgtttacttatact |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4677225 |
aagagagtgtcgggtttattttattttagagttttgtaataaaaggtggaagattatgtacctatatgatacctacttaattaaattgtttacttatact |
4677324 |
T |
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| Q |
230 |
tgatttaaatgatcaacattaatt |
253 |
Q |
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|||||| ||||||||||||||||| |
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| T |
4677325 |
tgattttaatgatcaacattaatt |
4677348 |
T |
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