View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_175 (Length: 251)

Name: NF0856_high_175
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_175
NF0856_high_175
[»] chr6 (16 HSPs)
chr6 (112-197)||(658560-658645)
chr6 (121-181)||(264250-264310)
chr6 (121-181)||(35069431-35069491)
chr6 (121-174)||(24626164-24626217)
chr6 (139-175)||(34430603-34430639)
chr6 (122-177)||(32014097-32014152)
chr6 (126-176)||(9632785-9632835)
chr6 (125-171)||(10645470-10645516)
chr6 (122-171)||(14929604-14929653)
chr6 (123-165)||(2455145-2455187)
chr6 (139-177)||(18076083-18076121)
chr6 (116-177)||(6538381-6538442)
chr6 (116-177)||(23063663-23063724)
chr6 (215-251)||(658506-658542)
chr6 (30-62)||(658696-658728)
chr6 (145-177)||(30926431-30926463)
[»] chr1 (29 HSPs)
chr1 (122-177)||(47498978-47499033)
chr1 (123-179)||(51688576-51688632)
chr1 (118-177)||(5894298-5894357)
chr1 (121-177)||(27820475-27820531)
chr1 (124-177)||(33541853-33541906)
chr1 (121-173)||(37473268-37473320)
chr1 (121-181)||(41505556-41505616)
chr1 (122-173)||(24562452-24562503)
chr1 (121-176)||(41195340-41195395)
chr1 (123-177)||(30581683-30581737)
chr1 (127-181)||(42391241-42391295)
chr1 (144-177)||(27976372-27976405)
chr1 (139-183)||(9572237-9572281)
chr1 (141-176)||(24417817-24417852)
chr1 (121-172)||(43230894-43230945)
chr1 (123-177)||(6556889-6556943)
chr1 (121-175)||(33546597-33546651)
chr1 (123-161)||(37617563-37617601)
chr1 (121-175)||(38247323-38247376)
chr1 (118-160)||(51190723-51190765)
chr1 (116-177)||(22343952-22344013)
chr1 (121-177)||(1510454-1510510)
chr1 (122-173)||(10665960-10666014)
chr1 (121-177)||(14331658-14331714)
chr1 (121-177)||(14576798-14576854)
chr1 (121-177)||(17727240-17727296)
chr1 (145-177)||(24552485-24552517)
chr1 (121-161)||(45855730-45855770)
chr1 (124-160)||(46225699-46225735)
[»] chr7 (16 HSPs)
chr7 (121-177)||(33672957-33673013)
chr7 (121-176)||(27863843-27863898)
chr7 (123-179)||(18865193-18865249)
chr7 (122-177)||(21568773-21568828)
chr7 (139-177)||(33678679-33678717)
chr7 (121-179)||(46139821-46139879)
chr7 (116-181)||(33128621-33128686)
chr7 (116-177)||(38500063-38500124)
chr7 (121-177)||(46280404-46280460)
chr7 (122-181)||(3308393-3308452)
chr7 (120-178)||(23989628-23989686)
chr7 (139-180)||(20189150-20189191)
chr7 (116-173)||(45263957-45264014)
chr7 (139-176)||(47795854-47795891)
chr7 (146-178)||(18837551-18837583)
chr7 (141-177)||(21619306-21619342)
[»] chr5 (23 HSPs)
chr5 (121-181)||(9202879-9202939)
chr5 (121-176)||(31051767-31051822)
chr5 (121-175)||(7706126-7706180)
chr5 (123-177)||(32372495-32372549)
chr5 (116-177)||(19460521-19460582)
chr5 (123-180)||(24030544-24030601)
chr5 (138-174)||(3569097-3569133)
chr5 (121-177)||(3735636-3735692)
chr5 (122-181)||(28776855-28776914)
chr5 (122-177)||(40426632-40426687)
chr5 (139-177)||(39105361-39105399)
chr5 (121-177)||(16938012-16938068)
chr5 (145-177)||(42646548-42646580)
chr5 (141-176)||(10772014-10772049)
chr5 (123-178)||(12554334-12554389)
chr5 (139-177)||(7319156-7319194)
chr5 (121-179)||(25461898-25461956)
chr5 (123-176)||(3520302-3520355)
chr5 (139-176)||(12425468-12425505)
chr5 (122-171)||(12433521-12433570)
chr5 (122-179)||(13697902-13697959)
chr5 (121-177)||(32703583-32703639)
chr5 (139-175)||(39477848-39477884)
[»] chr3 (23 HSPs)
chr3 (118-174)||(46886835-46886891)
chr3 (118-177)||(30956771-30956830)
chr3 (118-177)||(30972583-30972642)
chr3 (112-177)||(402676-402741)
chr3 (122-177)||(944363-944419)
chr3 (129-181)||(28240213-28240265)
chr3 (121-177)||(31365417-31365473)
chr3 (139-177)||(1508726-1508764)
chr3 (123-177)||(34235211-34235265)
chr3 (123-176)||(20003430-20003483)
chr3 (141-181)||(5435731-5435771)
chr3 (121-181)||(20880346-20880406)
chr3 (121-177)||(24684968-24685024)
chr3 (116-176)||(29002976-29003036)
chr3 (121-177)||(34034040-34034096)
chr3 (121-177)||(47132246-47132302)
chr3 (121-160)||(849551-849590)
chr3 (146-177)||(30443658-30443689)
chr3 (125-176)||(34610942-34610993)
chr3 (123-177)||(35959601-35959655)
chr3 (121-161)||(20257429-20257469)
chr3 (121-177)||(31403237-31403293)
chr3 (121-177)||(53789606-53789662)
[»] chr8 (17 HSPs)
chr8 (122-176)||(36963491-36963545)
chr8 (123-181)||(2833461-2833520)
chr8 (123-177)||(14956440-14956494)
chr8 (122-176)||(29819026-29819080)
chr8 (116-177)||(34236036-34236097)
chr8 (121-177)||(40980999-40981055)
chr8 (142-181)||(2840259-2840298)
chr8 (142-181)||(2844946-2844985)
chr8 (145-177)||(40859853-40859885)
chr8 (139-177)||(40637438-40637476)
chr8 (139-176)||(9130456-9130493)
chr8 (126-175)||(9956949-9956998)
chr8 (139-176)||(21119072-21119109)
chr8 (116-157)||(38648205-38648246)
chr8 (121-177)||(1058219-1058275)
chr8 (121-177)||(26215375-26215431)
chr8 (122-177)||(37353383-37353439)
[»] chr2 (23 HSPs)
chr2 (120-177)||(39659653-39659710)
chr2 (121-177)||(1633691-1633747)
chr2 (123-181)||(2416194-2416252)
chr2 (124-177)||(12795664-12795717)
chr2 (121-177)||(15757811-15757867)
chr2 (123-175)||(38010283-38010335)
chr2 (121-177)||(41407170-41407226)
chr2 (121-172)||(4606860-4606911)
chr2 (122-181)||(36534668-36534727)
chr2 (119-172)||(41880642-41880696)
chr2 (130-181)||(3311922-3311973)
chr2 (125-176)||(26626759-26626810)
chr2 (121-177)||(41293376-41293434)
chr2 (121-168)||(41812228-41812275)
chr2 (139-177)||(5599195-5599233)
chr2 (139-181)||(36114316-36114358)
chr2 (139-177)||(43570313-43570351)
chr2 (116-177)||(27695732-27695793)
chr2 (121-169)||(12194821-12194869)
chr2 (121-177)||(36285251-36285307)
chr2 (123-163)||(40279082-40279122)
chr2 (123-159)||(40835435-40835471)
chr2 (121-177)||(42457827-42457883)
[»] chr4 (23 HSPs)
chr4 (123-181)||(44863093-44863151)
chr4 (122-177)||(27028-27083)
chr4 (123-174)||(50662870-50662921)
chr4 (123-181)||(11389407-11389465)
chr4 (121-171)||(18814961-18815011)
chr4 (120-173)||(35571971-35572023)
chr4 (121-170)||(45935365-45935414)
chr4 (125-177)||(3155486-3155538)
chr4 (121-177)||(44797761-44797817)
chr4 (118-161)||(45104557-45104601)
chr4 (146-181)||(21731784-21731819)
chr4 (122-177)||(25904359-25904414)
chr4 (122-176)||(17204008-17204062)
chr4 (123-177)||(50681234-50681288)
chr4 (122-179)||(437373-437430)
chr4 (121-154)||(1203270-1203303)
chr4 (120-161)||(4212810-4212851)
chr4 (121-177)||(30066901-30066958)
chr4 (121-161)||(27330186-27330226)
chr4 (141-177)||(30377827-30377863)
chr4 (116-160)||(34213730-34213774)
chr4 (123-171)||(47119086-47119134)
chr4 (123-175)||(49202527-49202579)
[»] scaffold0050 (1 HSPs)
scaffold0050 (123-177)||(58475-58529)
[»] scaffold0018 (1 HSPs)
scaffold0018 (121-181)||(157976-158036)


Alignment Details
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 658645 - 658560
Alignment:
Q  112 gataatggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgctaagttatttctatagc 197  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  658645 gataatggtcctgtttggataaactatttattttcaacttatagcacaagtacttatcatgataagtgctaagttatttctatagc 658560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 264250 - 264310
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    ||||||||||| |||   | |||||||||||||||||||||||||||||||||||||||||    
T  264250 cctgtttggattaacagctaatttgcagcttatagcacaagtgcttatcatgataagtgct 264310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 35069431 - 35069491
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    ||||||| ||||||| | ||||||||||||||||||||||| | |||||||||||||||||    
T  35069431 cctgttttgataaacaacttatttgcagcttatagcacaagcgtttatcatgataagtgct 35069491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 24626164 - 24626217
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgat 174  Q
    ||||||||||||||| | |||||| ||||||||||||||| |||||||||||||    
T  24626164 cctgtttggataaacaacttatttacagcttatagcacaaatgcttatcatgat 24626217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 34430603 - 34430639
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgata 175  Q
    |||||||||||||||||||||||||||||||||||||    
T  34430603 ttatttgcagcttatagcacaagtgcttatcatgata 34430639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 32014097 - 32014152
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||| || ||||||||||||||||| | ||||||||||||| |||||    
T  32014097 ctgtttggataaattacttatttgcagcttatagaaaaagtgcttatcattataag 32014152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 9632785 - 9632835
Alignment:
Q  126 ttggataaactatttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    |||||||||| | |||||||||||||||||||||| |||||||||| ||||    
T  9632785 ttggataaacaacttatttgcagcttatagcacaaatgcttatcataataa 9632835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 10645516 - 10645470
Alignment:
Q  125 tttggataaactatttatttgcagcttatagcacaagtgcttatcat 171  Q
    ||||||||||| | |||||||||||||||||||||| ||||||||||    
T  10645516 tttggataaacaacttatttgcagcttatagcacaaatgcttatcat 10645470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 14929604 - 14929653
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcat 171  Q
    ||||||||| |||| | | |||||||||||||||||||||||||||||||    
T  14929604 ctgtttggacaaacaactcatttgcagcttatagcacaagtgcttatcat 14929653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 2455145 - 2455187
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgct 165  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||    
T  2455145 tgtttggatgaacaatttatttgcagcttatggcacaagtgct 2455187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 18076083 - 18076121
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  18076083 ttatttgcagcttatagcacaagcgcttatcataataag 18076121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 6538381 - 6538442
Alignment:
Q  116 atggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||| ||||||||||||||    |||||||||||||||||||||||  ||||| ||||||||    
T  6538381 atgggcctgtttggataaatagcttatttgcagcttatagcacaagcacttataatgataag 6538442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 23063724 - 23063663
Alignment:
Q  116 atggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||| ||||||||||| | | | ||||||||| |||||||||||| || |||||||||||||    
T  23063724 atggccctgtttggattatcaacttatttgcatcttatagcacaaatgattatcatgataag 23063663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 658542 - 658506
Alignment:
Q  215 gttaaattgtttttgtttaagctatgctgaagaactt 251  Q
    |||||||| |||||||||||||||||||| |||||||    
T  658542 gttaaattatttttgtttaagctatgctggagaactt 658506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 658728 - 658696
Alignment:
Q  30 tcatgatctatataatatattaacatgcacaag 62  Q
    |||||||||||||||||||| ||||||||||||    
T  658728 tcatgatctatataatatatgaacatgcacaag 658696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 30926431 - 30926463
Alignment:
Q  145 gcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||||| |||||||||||||||    
T  30926431 gcagcttatagcacaagggcttatcatgataag 30926463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 47499033 - 47498978
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  47499033 ctgtttggataaacaacttatttgcagcttatagcacaagtgcttatcatgataag 47498978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 51688576 - 51688632
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtg 179  Q
    ||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  51688576 tgtttggataaacaacttatttgcagcttatagtacaagtgcttatcatgataagtg 51688632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 5894357 - 5894298
Alignment:
Q  118 ggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||||||   ||||||| |||||||||||||||||||||||||||||||    
T  5894357 ggtcctgtttggataaacagcttatttgaagcttatagcacaagtgcttatcatgataag 5894298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 27820531 - 27820475
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||| | ||||||||||||||||||| ||| |||||||||||||||    
T  27820531 cctgtttggataaacaacttatttgcagcttatagcataagcgcttatcatgataag 27820475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 33541906 - 33541853
Alignment:
Q  124 gtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||| | |||||||||| |||||||||||||| |||||||||||||    
T  33541906 gtttggataaacaacttatttgcagtttatagcacaagtgtttatcatgataag 33541853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 37473268 - 37473320
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatga 173  Q
    ||||||||||||||| | ||||||||||||||| |||||||| ||||||||||    
T  37473268 cctgtttggataaacaacttatttgcagcttattgcacaagttcttatcatga 37473320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 41505556 - 41505616
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    |||||||||||||||   ||||||||||||||||||||||  |||||| ||||||||||||    
T  41505556 cctgtttggataaacagcttatttgcagcttatagcacaaacgcttatgatgataagtgct 41505616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 24562503 - 24562452
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatga 173  Q
    ||||||||||||||   ||||||||||||||||||||| |||||||||||||    
T  24562503 ctgtttggataaacagcttatttgcagcttatagcacatgtgcttatcatga 24562452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 41195395 - 41195340
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    ||||||||||||||  | ||||||||||||||||||||||| ||||||| ||||||    
T  41195395 cctgtttggataaataacttatttgcagcttatagcacaagcgcttatcctgataa 41195340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 30581683 - 30581737
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||  |||||||||||||||||| |||||| ||| ||||||||||    
T  30581683 tgtttggataaacagtttatttgcagcttatagaacaagtacttttcatgataag 30581737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 42391241 - 42391295
Alignment:
Q  127 tggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    ||||||||| |||||||||| ||||| |||||||  |||||||||||||||||||    
T  42391241 tggataaacaatttatttgcggcttacagcacaaaagcttatcatgataagtgct 42391295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 27976372 - 27976405
Alignment:
Q  144 tgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||||||||||||||||||||||    
T  27976372 tgcagcttatagcacaagtgcttatcatgataag 27976405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 9572281 - 9572237
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataagtgctaa 183  Q
    |||||||||||||||||||||||||| ||||||||| || |||||    
T  9572281 ttatttgcagcttatagcacaagtgcctatcatgatcagcgctaa 9572237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 24417852 - 24417817
Alignment:
Q  141 atttgcagcttatagcacaagtgcttatcatgataa 176  Q
    |||||||||||||| |||||||||||||||||||||    
T  24417852 atttgcagcttataacacaagtgcttatcatgataa 24417817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 43230945 - 43230894
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatg 172  Q
    ||||||||||||||| | || |||| ||||||||||||||||||| ||||||    
T  43230945 cctgtttggataaacaaattgtttggagcttatagcacaagtgctcatcatg 43230894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 6556889 - 6556943
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||   || |||| || ||||||||||||||||||||||||||||    
T  6556889 tgtttggataaacagcttctttgtagtttatagcacaagtgcttatcatgataag 6556943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 33546651 - 33546597
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgata 175  Q
    |||||||||||||||   ||||| |||||||| |||||||||| |||||||||||    
T  33546651 cctgtttggataaacagcttattcgcagcttaaagcacaagtgtttatcatgata 33546597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 37617601 - 37617563
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaag 161  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  37617601 tgtttgtataaacaatttatttgcagcttatagcacaag 37617563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 38247323 - 38247376
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgata 175  Q
    ||||||||||||||| |  ||||||||||||||||||||||  ||||||||||||    
T  38247323 cctgtttggataaac-agctatttgcagcttatagcacaagcacttatcatgata 38247376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 51190723 - 51190765
Alignment:
Q  118 ggtcctgtttggataaactatttatttgcagcttatagcacaa 160  Q
    |||||||||||||||||| | ||||||| ||||||||||||||    
T  51190723 ggtcctgtttggataaacaacttatttgtagcttatagcacaa 51190765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 22343952 - 22344013
Alignment:
Q  116 atggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||| ||||||||||||| | | ||||||||| ||||  ||||||| |||||||||||||||    
T  22343952 atgggcctgtttggataatcaacttatttgcaacttaccgcacaagcgcttatcatgataag 22344013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 1510510 - 1510454
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||   ||||||| | ||||||||||||| ||||||| |||||||    
T  1510510 cctgtttggataaacagcttatttgtatcttatagcacaagcgcttatcttgataag 1510454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 10665960 - 10666014
Alignment:
Q  122 ctgtttggataaactatttattt---gcagcttatagcacaagtgcttatcatga 173  Q
    |||||||||||||| | ||||||   |||||||||||||||| ||||||||||||    
T  10665960 ctgtttggataaacaacttatttacagcagcttatagcacaaatgcttatcatga 10666014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 14331658 - 14331714
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||| |||||||   ||||||| ||||||||||||||| |||| ||||||||||    
T  14331658 cctgtttagataaacagcttatttgaagcttatagcacaagcgcttctcatgataag 14331714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 14576854 - 14576798
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||| ||||||||   |||||| ||||||||||||||||  ||||||||||||||    
T  14576854 cctgttgggataaacatcttatttccagcttatagcacaagctcttatcatgataag 14576798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 17727296 - 17727240
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||| | |||| || |||||||||||||||  ||||||| ||||||    
T  17727296 cctgtttggataaacaacttatgtgtagcttatagcacaagcacttatcaagataag 17727240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 24552517 - 24552485
Alignment:
Q  145 gcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||||||| |||||||||||||    
T  24552517 gcagcttatagcacaagtgattatcatgataag 24552485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 45855730 - 45855770
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaag 161  Q
    ||||||||||||| | | |||||||||||||||||||||||    
T  45855730 cctgtttggataaccaacttatttgcagcttatagcacaag 45855770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 46225699 - 46225735
Alignment:
Q  124 gtttggataaactatttatttgcagcttatagcacaa 160  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  46225699 gtttggataaacaatttatttggagcttatagcacaa 46225735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 33672957 - 33673013
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||    
T  33672957 cctgtttggataaactatttatttgcagcttatagcacaagtatttattatgataag 33673013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 27863898 - 27863843
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||    
T  27863898 cctgtttggataaacaacttatttgtagcttatagcacaagtgcttatcatgataa 27863843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 18865249 - 18865193
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtg 179  Q
    ||||||||||||| | ||||||||||||||||||||||  |||||||||||||||||    
T  18865249 tgtttggataaacaacttatttgcagcttatagcacaaacgcttatcatgataagtg 18865193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 21568828 - 21568773
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||   || |||||||||||||||| |||||||||||||||||||    
T  21568828 ctgtttggataaacagcttgtttgcagcttatagcataagtgcttatcatgataag 21568773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 33678679 - 33678717
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  33678679 ttatttgcatcttatagcacaagtgcttatcatgataag 33678717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 46139821 - 46139879
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtg 179  Q
    ||||||||| ||||| | |||||||||||||||| ||||||  ||||||||||||||||    
T  46139821 cctgtttggttaaacaacttatttgcagcttataacacaagcacttatcatgataagtg 46139879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 33128621 - 33128686
Alignment:
Q  116 atggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    |||| |||||||||||||||   |||||||||||||| |||||||   ||||||||||||||||||    
T  33128621 atgggcctgtttggataaacagcttatttgcagcttacagcacaaacacttatcatgataagtgct 33128686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 38500124 - 38500063
Alignment:
Q  116 atggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||| ||||||| |||||||   |||||||||| |||||||||||| |||||||||||||||    
T  38500124 atgggcctgtttagataaacagcttatttgcagtttatagcacaagcgcttatcatgataag 38500063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 46280460 - 46280404
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||  |||||||  ||||||||||||||| | |||||||||||||    
T  46280460 cctgtttggataaacagtttatttatagcttatagcacaagcgtttatcatgataag 46280404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 3308452 - 3308393
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    |||||| |||||||   ||||||| |||||||||||||||| ||| ||||||||||||||    
T  3308452 ctgtttagataaacagcttatttggagcttatagcacaagtacttttcatgataagtgct 3308393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 23989686 - 23989628
Alignment:
Q  120 tcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagt 178  Q
    |||||||||||  ||| | ||||||||||||||||| ||| | ||||||||||||||||    
T  23989686 tcctgtttggagtaacaacttatttgcagcttatagtacacgcgcttatcatgataagt 23989628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 20189191 - 20189150
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataagtgc 180  Q
    |||||||||||||||  || ||||||||||||||||||||||    
T  20189191 ttatttgcagcttatgacataagtgcttatcatgataagtgc 20189150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 45263957 - 45264014
Alignment:
Q  116 atggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatga 173  Q
    |||| ||||||||||||||| | |||||||| ||||||  |||||| |||||||||||    
T  45263957 atgggcctgtttggataaacaacttatttgcggcttatcacacaagcgcttatcatga 45264014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 47795854 - 47795891
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  47795854 ttatttgcagcttatagcataagcgcttatcatgataa 47795891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 18837583 - 18837551
Alignment:
Q  146 cagcttatagcacaagtgcttatcatgataagt 178  Q
    |||||||||||||||||||||||||||| ||||    
T  18837583 cagcttatagcacaagtgcttatcatgacaagt 18837551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 21619306 - 21619342
Alignment:
Q  141 atttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||||||||  ||||||||||||||    
T  21619306 atttgcagcttatagcacaagcacttatcatgataag 21619342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 9202939 - 9202879
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    |||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||    
T  9202939 cctgtttggataaacatcttatttgcagcttatagcacaagtgtttatcatgataagtgct 9202879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 31051767 - 31051822
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  31051767 cctgtttgaataaaccatttattcgcagcttatagcacaagtgcttatcatgataa 31051822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 175
Target Start/End: Complemental strand, 7706180 - 7706126
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgata 175  Q
    |||||||| |||||| | |||||||||| ||||||||||||||||||||||||||    
T  7706180 cctgtttgtataaacaacttatttgcaggttatagcacaagtgcttatcatgata 7706126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 32372495 - 32372549
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||| | |||||||||||||||||||||||  ||||||||||||||    
T  32372495 tgtttggataaacaacttatttgcagcttatagcacaagcacttatcatgataag 32372549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 19460582 - 19460521
Alignment:
Q  116 atggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||| | ||||||||||   |||||||||||||||||||||| ||||||||||||||||    
T  19460582 atggtccaggttggataaacagcttatttgcagcttatagcacaaatgcttatcatgataag 19460521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 24030601 - 24030544
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgc 180  Q
    |||||||||||||   |||||||||||||||||||||||  |||||||||||||||||    
T  24030601 tgtttggataaacagcttatttgcagcttatagcacaagcacttatcatgataagtgc 24030544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 174
Target Start/End: Complemental strand, 3569133 - 3569097
Alignment:
Q  138 tttatttgcagcttatagcacaagtgcttatcatgat 174  Q
    |||||||||||||||||||||||||||||||||||||    
T  3569133 tttatttgcagcttatagcacaagtgcttatcatgat 3569097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 3735692 - 3735636
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||| |  |||||||||||||||||||||| | |||||||||||||    
T  3735692 cctgtttggataaacaacctatttgcagcttatagcacaagagattatcatgataag 3735636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 28776855 - 28776914
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    |||||||||||||| | ||||||||||||||||||  |||  ||||||||||||||||||    
T  28776855 ctgtttggataaacaacttatttgcagcttatagcctaagcacttatcatgataagtgct 28776914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 40426632 - 40426687
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||| | | |||||||||||||||||||||  ||||||||||||||    
T  40426632 ctgtttggataaacaactcatttgcagcttatagcacaagcacttatcatgataag 40426687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 39105361 - 39105399
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  39105361 ttatttgcagcttatagcataagtgcttatcatgataag 39105399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 16938068 - 16938012
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||| |||| | ||||||| |||||||| |||||||| |||||||||||||    
T  16938068 cctgtttggacaaacaacttatttgaagcttataacacaagtgtttatcatgataag 16938012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 42646548 - 42646580
Alignment:
Q  145 gcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||||||||||||||||||||    
T  42646548 gcagcttatagcacaagtgcttatcatgataag 42646580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 176
Target Start/End: Complemental strand, 10772049 - 10772014
Alignment:
Q  141 atttgcagcttatagcacaagtgcttatcatgataa 176  Q
    ||||||||||||||||| ||||||||||||||||||    
T  10772049 atttgcagcttatagcataagtgcttatcatgataa 10772014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 12554334 - 12554389
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagt 178  Q
    ||||||||||||| | |||||||||||||| |||||||  |||||| |||||||||    
T  12554334 tgtttggataaacaacttatttgcagcttaaagcacaaacgcttattatgataagt 12554389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 7319194 - 7319156
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  7319194 ttatttacagcttatagcacaagcgcttatcatgataag 7319156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 25461956 - 25461898
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtg 179  Q
    ||||||||||||| |   ||||||| |||||||| |||||| |||||||||||||||||    
T  25461956 cctgtttggataagcaggttatttgtagcttataacacaagcgcttatcatgataagtg 25461898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 3520302 - 3520355
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    ||||||||||||| | |||||| ||||||||||||||||  ||| |||||||||    
T  3520302 tgtttggataaacaacttattttcagcttatagcacaagcacttgtcatgataa 3520355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 12425468 - 12425505
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  12425468 ttatttgcagcttatagtacaagtgtttatcatgataa 12425505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 12433570 - 12433521
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcat 171  Q
    |||||||||||||| | |||||||||||||||| |||||| | |||||||    
T  12433570 ctgtttggataaacaacttatttgcagcttataacacaagcgtttatcat 12433521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 13697959 - 13697902
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtg 179  Q
    |||||||||||||| | |||||||||||||||| || |||   |||||||||||||||    
T  13697959 ctgtttggataaacaacttatttgcagcttataacataagcatttatcatgataagtg 13697902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 32703639 - 32703583
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||| || |||| | |||||||||||||||||||||||   |||||||||||||    
T  32703639 cctgtttagaaaaacaacttatttgcagcttatagcacaagcatttatcatgataag 32703583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 39477848 - 39477884
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgata 175  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  39477848 ttatttgcagcttataggacaagcgcttatcatgata 39477884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 46886891 - 46886835
Alignment:
Q  118 ggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgat 174  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  46886891 ggtcctgtttggataaacaacttatttgcagcttatagcataagtgcttatcatgat 46886835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 30956830 - 30956771
Alignment:
Q  118 ggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||| |||||||||||||   ||||||||||||||||||||||| |||||||||||||||    
T  30956830 ggtcatgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataag 30956771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 30972642 - 30972583
Alignment:
Q  118 ggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||| |||||||||||||   ||||||||||||||||||||||| |||||||||||||||    
T  30972642 ggtcatgtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataag 30972583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 402741 - 402676
Alignment:
Q  112 gataatggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||| |||| |||||| | |||| | |||||||||||| ||||||||||||||||||||||||||    
T  402741 gataaaggtcttgtttgaacaaacaacttatttgcagctcatagcacaagtgcttatcatgataag 402676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 944363 - 944419
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcac-aagtgcttatcatgataag 177  Q
    |||||||||||||| | |||||||||||||||| ||| |||||||||||||||||||    
T  944363 ctgtttggataaacaacttatttgcagcttataacactaagtgcttatcatgataag 944419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 28240213 - 28240265
Alignment:
Q  129 gataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    ||||||| | |||| |||||||||||||||||| |||||||||||||||||||    
T  28240213 gataaacaacttatctgcagcttatagcacaagcgcttatcatgataagtgct 28240265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 31365473 - 31365417
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||| |||||||||   ||||||||||||||||||||||||| |||||||||||||    
T  31365473 cctgtgtggataaacagcttatttgcagcttatagcacaagtgattatcatgataag 31365417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 1508764 - 1508726
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  1508764 ttatttgcaacttatagcacaagtgcttatcatgataag 1508726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 34235265 - 34235211
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||| | ||||||| ||||||||| ||| |||||||||||||||||    
T  34235265 tgtttggataaacaacttatttgtagcttatagtacatgtgcttatcatgataag 34235211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 20003483 - 20003430
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    |||||||| |||| | ||||||| |||||||||||| |||||||||||||||||    
T  20003483 tgtttggagaaacaacttatttgtagcttatagcacgagtgcttatcatgataa 20003430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 5435731 - 5435771
Alignment:
Q  141 atttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  5435731 atttacagcttatagcataagtgcttatcatgataagtgct 5435771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 20880346 - 20880406
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    |||||||||||| || | |||||||||| |||||||||||| | ||||||| |||||||||    
T  20880346 cctgtttggatagacaacttatttgcagtttatagcacaagcggttatcataataagtgct 20880406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 24685024 - 24684968
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||| ||  ||||||||||||||||||||||| | || |||||||||||    
T  24685024 cctgtttggatagacggtttatttgcagcttatagcacaaattctcatcatgataag 24684968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 29003036 - 29002976
Alignment:
Q  116 atggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    |||| ||||||||||||||  ||||||||||||||||||| | ||| | ||||||||||||    
T  29003036 atggccctgtttggataaataatttatttgcagcttatagtaaaagcgtttatcatgataa 29002976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 34034040 - 34034096
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||| | |||||| |||||||||| ||| | |||||||||||||||    
T  34034040 cctgtttggataaacaacttattttcagcttatagaacaggcgcttatcatgataag 34034096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 47132246 - 47132302
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||| | |||||| || |||||||||||||  ||||||||||||||    
T  47132246 cctgtttggataaacaacttattttcaccttatagcacaagcacttatcatgataag 47132302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 160
Target Start/End: Original strand, 849551 - 849590
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaa 160  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  849551 cctgtttggataaacaacttatttgcagcttatagcacaa 849590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 177
Target Start/End: Original strand, 30443658 - 30443689
Alignment:
Q  146 cagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||||||||||||||||||||    
T  30443658 cagcttatagcacaagtgcttatcatgataag 30443689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 34610993 - 34610942
Alignment:
Q  125 tttggataaactatttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    ||||||||||| | |||| ||||||||||| |||||| ||||||||||||||    
T  34610993 tttggataaacaacttatctgcagcttataacacaagcgcttatcatgataa 34610942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 35959655 - 35959601
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||   |||||||||||||||| ||||||  ||||||||||||||    
T  35959655 tgtttggataaacagcttatttgcagcttatatcacaagctcttatcatgataag 35959601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 20257429 - 20257469
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaag 161  Q
    ||||||||||| ||| |||||||||||||||||| ||||||    
T  20257429 cctgtttggattaacaatttatttgcagcttataacacaag 20257469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 31403237 - 31403293
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||   |||||||||| || |||| |||||||||||||| |||||    
T  31403237 cctgtttggataaacaggttatttgcagtttctagcccaagtgcttatcatcataag 31403293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 53789662 - 53789606
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||| ||||| | ||| |||||||||||  |||||| |||||||||||||||    
T  53789662 cctgtttgggtaaacgacttaattgcagcttatgccacaagcgcttatcatgataag 53789606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 36963545 - 36963491
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||    
T  36963545 ctgtttgggtaaacaatttatttgcagcttatagcacaagcgcttatcatgataa 36963491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 2833520 - 2833461
Alignment:
Q  123 tgtttggataaactatttattt-gcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    ||||||||||||||  |||||| ||||||||||||| |||||||||||||||||||||||    
T  2833520 tgtttggataaactgcttattttgcagcttatagcataagtgcttatcatgataagtgct 2833461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 14956494 - 14956440
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||| | ||||||||||||||||||||||  |||||||||||||||    
T  14956494 tgtttggataaacaacttatttgcagcttatagcacaatcgcttatcatgataag 14956440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 29819080 - 29819026
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    |||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||    
T  29819080 ctgtttggataaacaacttatttgcagcttatagcaaaagggcttatcatgataa 29819026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 34236036 - 34236097
Alignment:
Q  116 atggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||||||| | |||||||||||||||| |||||  | |||||||||||||    
T  34236036 atggtcctgtttggataaacaacttatttgcagcttataacacaaacggttatcatgataag 34236097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 40980999 - 40981055
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||   ||||||||||||||||||||||| ||||||| |||||||    
T  40980999 cctgtttggataaacagcttatttgcagcttatagcacaagcgcttatcttgataag 40981055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 2840259 - 2840298
Alignment:
Q  142 tttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  2840259 tttgcagcttatagcataagtgcttatcatgataagtgct 2840298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 2844946 - 2844985
Alignment:
Q  142 tttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  2844946 tttgcagcttatagcataagtgcttatcatgataagtgct 2844985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 40859885 - 40859853
Alignment:
Q  145 gcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||||||||||||||||||||    
T  40859885 gcagcttatagcacaagtgcttatcatgataag 40859853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 40637476 - 40637438
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  40637476 ttatttgcagcttatagcataagtgcttatcataataag 40637438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 9130493 - 9130456
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  9130493 ttatttgcagcttatagcacaagtggtcatcatgataa 9130456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 9956998 - 9956949
Alignment:
Q  126 ttggataaactatttatttgcagcttatagcacaagtgcttatcatgata 175  Q
    |||||||||| | ||||||| |||||||||||||||  ||||||||||||    
T  9956998 ttggataaacaacttatttgtagcttatagcacaagcacttatcatgata 9956949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 21119109 - 21119072
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  21119109 ttatttgcagcttatagcataagtgcttatcataataa 21119072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 38648205 - 38648246
Alignment:
Q  116 atggtcctgtttggataaactatttatttgcagcttatagca 157  Q
    |||||||| ||||||| ||||| |||||||||||||||||||    
T  38648205 atggtcctttttggattaactacttatttgcagcttatagca 38648246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 1058275 - 1058219
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||| ||||||   ||||||||||||||||||||||| |||||  ||||||||    
T  1058275 cctgtttgaataaacagcttatttgcagcttatagcacaagcgcttactatgataag 1058219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 26215375 - 26215431
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||| |||||| | |||||| ||||||||||||| || |||||| ||||||||    
T  26215375 cctgtttgtataaacaacttattttcagcttatagcacgagcgcttataatgataag 26215431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 37353439 - 37353383
Alignment:
Q  122 ctgtttggataaactattt-atttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||| | || ||||||||||||||||| || ||||||| ||||||||    
T  37353439 ctgtttggataaacaacttgatttgcagcttatagcataaatgcttatgatgataag 37353383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 39659710 - 39659653
Alignment:
Q  120 tcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||    
T  39659710 tcctgtttggataaacaacttatttgcagcttagagcacaaatgcttatcatgataag 39659653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 1633747 - 1633691
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||   ||||||||||||||||||| |||||||||||||||||||    
T  1633747 cctgtttggataaacagcttatttgcagcttatagcagaagtgcttatcatgataag 1633691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 2416194 - 2416252
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    ||||||||||||| | |||||| ||||||||||||||||| ||||||||| ||||||||    
T  2416194 tgtttggataaacaacttattttcagcttatagcacaagttcttatcatgttaagtgct 2416252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Original strand, 12795664 - 12795717
Alignment:
Q  124 gtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||  ||||||||||| |||||||| |||||||||||||||||||    
T  12795664 gtttggataaacagtttatttgcagtttatagcataagtgcttatcatgataag 12795717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 15757867 - 15757811
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||   |||||| |||||||||||||||| |||||||||||||||    
T  15757867 cctgtttggataaacagcttattttcagcttatagcacaagcgcttatcatgataag 15757811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 38010283 - 38010335
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgata 175  Q
    ||||| ||||||| | |||||||||||||||| ||||||||||||||||||||    
T  38010283 tgtttagataaacaacttatttgcagcttatatcacaagtgcttatcatgata 38010335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 41407170 - 41407226
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||   || |||||||||||||||||||| |||||||||||||||    
T  41407170 cctgtttggataaacagcttgtttgcagcttatagcacaagcgcttatcatgataag 41407226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 4606860 - 4606911
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatg 172  Q
    ||||||||||||||| | ||||| |||||||||| |||||||||||||||||    
T  4606860 cctgtttggataaacaacttattcgcagcttataacacaagtgcttatcatg 4606911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 36534668 - 36534727
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    |||||||||||||| | |||||| ||| ||||| || |||||||||||||||||||||||    
T  36534668 ctgtttggataaacaacttattttcagtttataacataagtgcttatcatgataagtgct 36534727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 41880696 - 41880642
Alignment:
Q  119 gtcctgtttggataaactattta-tttgcagcttatagcacaagtgcttatcatg 172  Q
    ||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||    
T  41880696 gtcctgtttggataaacaacttactttgcagcttatagcacaagcgcttatcatg 41880642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 3311922 - 3311973
Alignment:
Q  130 ataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    |||||| | |||||| |||||||||||||||||| ||||||||| |||||||    
T  3311922 ataaacaaattattttcagcttatagcacaagtgattatcatgaaaagtgct 3311973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 26626759 - 26626810
Alignment:
Q  125 tttggataaactatttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    ||||||||||| | ||||||||||||||||||| |||  |||||||||||||    
T  26626759 tttggataaacaacttatttgcagcttatagcataagctcttatcatgataa 26626810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 41293434 - 41293376
Alignment:
Q  121 cctgtttggataaactatttattt--gcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||| | ||||||  |||||||||||||||||||| ||||||| ||||    
T  41293434 cctgtttggataaacaacttatttttgcagcttatagcacaagtgcgtatcatggtaag 41293376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 41812275 - 41812228
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttat 168  Q
    ||||||||||||||| | |||||||||| |||||||||||||| ||||    
T  41812275 cctgtttggataaacaacttatttgcagtttatagcacaagtgattat 41812228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 5599233 - 5599195
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  5599233 ttatttgcagcttatagcataagtgcttatcataataag 5599195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 36114316 - 36114358
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||    
T  36114316 ttatttgcagcttatagtacacgtgtttatcatgataagtgct 36114358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 43570313 - 43570351
Alignment:
Q  139 ttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  43570313 ttatttgcagcttatagcacaagcacttatcatgataag 43570351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 27695793 - 27695732
Alignment:
Q  116 atggtcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||| ||| ||||||||||| | ||||||| ||||||||||||||   ||||||||||||||    
T  27695793 atggacctatttggataaacaacttatttgtagcttatagcacaaacacttatcatgataag 27695732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 12194821 - 12194869
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatc 169  Q
    ||||||||| ||||| | ||||||  |||||||||||||||||||||||    
T  12194821 cctgtttggttaaacaacttatttatagcttatagcacaagtgcttatc 12194869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 36285251 - 36285307
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||| | ||| |||||||||||||||||| ||||||  ||||| ||||||||    
T  36285251 cctgtttggttcaacaatttatttgcagcttataacacaagcacttataatgataag 36285307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 40279082 - 40279122
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtg 163  Q
    ||||||||||||| | ||||||| |||||||||||||||||    
T  40279082 tgtttggataaacaacttatttgtagcttatagcacaagtg 40279122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 40835435 - 40835471
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcaca 159  Q
    ||||||||||||| | |||||||||||||||||||||    
T  40835435 tgtttggataaacaacttatttgcagcttatagcaca 40835471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 42457827 - 42457883
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||| ||| | |||||||  |||||||||||||| || ||||||||||||    
T  42457827 cctgtttggattaaccacttatttgtggcttatagcacaagcgcctatcatgataag 42457883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 44863151 - 44863093
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    ||||||||||||| | |||||||||||||||||||||||  ||| ||||||||||||||    
T  44863151 tgtttggataaacaacttatttgcagcttatagcacaagcacttgtcatgataagtgct 44863093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 27083 - 27028
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||   || |||||||||||||||||||| |||||||||||||||    
T  27083 ctgtttggataaacatcttgtttgcagcttatagcacaagcgcttatcatgataag 27028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 50662921 - 50662870
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgat 174  Q
    ||||||||||||| | |||||||||||||||| |||||| ||||||||||||    
T  50662921 tgtttggataaacaacttatttgcagcttatatcacaagagcttatcatgat 50662870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 11389407 - 11389465
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    ||||||||||||| | |||||||||| ||||| ||  ||||||||||||||||||||||    
T  11389407 tgtttggataaacaacttatttgcagtttatatcatgagtgcttatcatgataagtgct 11389465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 18814961 - 18815011
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcat 171  Q
    ||||||||||||||   |||||||||||||||| |||||||||||||||||    
T  18814961 cctgtttggataaatggtttatttgcagcttatggcacaagtgcttatcat 18815011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 35572023 - 35571971
Alignment:
Q  120 tcctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatga 173  Q
    |||||| ||||||||| | ||||||||||||||||||||||||| |||||||||    
T  35572023 tcctgtatggataaac-acttatttgcagcttatagcacaagtggttatcatga 35571971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 45935414 - 45935365
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatca 170  Q
    ||||||||||||||| | |||||||||||||||||| |||| ||||||||    
T  45935414 cctgtttggataaacaacttatttgcagcttatagctcaagcgcttatca 45935365  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 3155486 - 3155538
Alignment:
Q  125 tttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||| | |||| |||||||||||| ||||| |||||||||||||||    
T  3155486 tttggataaacaacttatctgcagcttatagtacaagcgcttatcatgataag 3155538  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 44797761 - 44797817
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||||| | ||||||||| ||||||||||||| | |||||||| ||||    
T  44797761 cctgtttggataaacaacttatttgcaacttatagcacaagcgattatcatggtaag 44797817  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 45104601 - 45104557
Alignment:
Q  118 ggtcctgtttggataaactattta-tttgcagcttatagcacaag 161  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  45104601 ggtcctgtttggataaactaattattttgcagcttatagcacaag 45104557  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 21731819 - 21731784
Alignment:
Q  146 cagcttatagcacaagtgcttatcatgataagtgct 181  Q
    |||||||||||||||| |||||||||||||||||||    
T  21731819 cagcttatagcacaagcgcttatcatgataagtgct 21731784  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 25904414 - 25904359
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||| | | |||||||| ||||||||||||  ||||||||||||||    
T  25904414 ctgtttggataaacaactcatttgcagattatagcacaagcacttatcatgataag 25904359  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 17204008 - 17204062
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataa 176  Q
    |||||||||||||| | ||||||||||||||||| |||||  ||||||| |||||    
T  17204008 ctgtttggataaacaacttatttgcagcttatagaacaagcacttatcacgataa 17204062  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 50681288 - 50681234
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||| | ||||||  |||||||||||||||  ||||||||||||||    
T  50681288 tgtttggataaacaacttatttatagcttatagcacaagaacttatcatgataag 50681234  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 437430 - 437373
Alignment:
Q  122 ctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtg 179  Q
    |||||||||||||| | ||||||||||||||||  |||||   |||||||||||||||    
T  437430 ctgtttggataaacgacttatttgcagcttataatacaagcttttatcatgataagtg 437373  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 1203303 - 1203270
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttata 154  Q
    ||||||||||||||| ||||||||||||||||||    
T  1203303 cctgtttggataaacaatttatttgcagcttata 1203270  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 4212810 - 4212851
Alignment:
Q  120 tcctgtttggataaactatttatttgcagcttatagcacaag 161  Q
    |||||||||||||||| | |||||| ||||||||||||||||    
T  4212810 tcctgtttggataaacaacttattttcagcttatagcacaag 4212851  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 30066958 - 30066901
Alignment:
Q  121 cctgtttggataaactattta-tttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||| |||||| ||||| |||||||||||||||| ||| |||||| ||||||||    
T  30066958 cctgtttgcataaacaatttaatttgcagcttatagcataagcgcttataatgataag 30066901  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 27330226 - 27330186
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaag 161  Q
    ||||||||||||||| | ||||||| |||||||||||||||    
T  27330226 cctgtttggataaacaacttatttgtagcttatagcacaag 27330186  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 30377863 - 30377827
Alignment:
Q  141 atttgcagcttatagcacaagtgcttatcatgataag 177  Q
    |||||||||||||||||||| || |||||||||||||    
T  30377863 atttgcagcttatagcacaaatgtttatcatgataag 30377827  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 34213774 - 34213730
Alignment:
Q  116 atggtcctgtttggataaactatttatttgcagcttatagcacaa 160  Q
    |||||||||||||||||| | | |||||||||||||||| |||||    
T  34213774 atggtcctgtttggataagcaacttatttgcagcttataacacaa 34213730  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 47119134 - 47119086
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcat 171  Q
    ||||||||||||| | ||||||||| |||||||||||||  ||||||||    
T  47119134 tgtttggataaacaacttatttgcaacttatagcacaagcacttatcat 47119086  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 49202527 - 49202579
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgata 175  Q
    ||||||||||||| | ||||||||||||||||| |||||  |||| |||||||    
T  49202527 tgtttggataaacaacttatttgcagcttatagtacaagcacttaacatgata 49202579  T

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Target: scaffold0050 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 58475 - 58529
Alignment:
Q  123 tgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataag 177  Q
    ||||||||||||| | |||||||||||||| ||||||||||||| |||| |||||    
T  58475 tgtttggataaacaacttatttgcagcttagagcacaagtgcttgtcataataag 58529  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 157976 - 158036
Alignment:
Q  121 cctgtttggataaactatttatttgcagcttatagcacaagtgcttatcatgataagtgct 181  Q
    |||||||||||||||   ||||||||||||||||||||||   ||||| ||||||| ||||    
T  157976 cctgtttggataaacagcttatttgcagcttatagcacaaacacttatgatgataattgct 158036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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