View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_185 (Length: 249)
Name: NF0856_high_185
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_185 |
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| [»] scaffold0427 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: scaffold0427 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 7122 - 6885
Alignment:
| Q |
13 |
gagaaggttgaaagataaatcaaagaaagcgggaatgggataaatttggaaaagtagttggggaatggtagaagaaaacacaggaa-caggaaaggaact |
111 |
Q |
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| T |
7122 |
gagaaggttgaaagataaatcaaagaaagcgagaatgggataaatttggaaaagtagttggggaatggtagaagaaaacacaggaaacaggaaaggaact |
7023 |
T |
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| Q |
112 |
cagcagcaagaagagagaaagttaggggagagagaaagggaatgtataaagtgttggtggtgcatcataatatttgtggaacctcacaatctaaccatac |
211 |
Q |
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| T |
7022 |
cagtagcaagaagagagaaagctaggggagagagaaagggaatgtataaattgatggtggtgcatcataatatttgtggaacctcacaatctaaccatac |
6923 |
T |
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| Q |
212 |
attaaacttgctcagggtgggagacctatcaaactctc |
249 |
Q |
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| T |
6922 |
attaaacttgctcacggtgggagacctatcaaactctc |
6885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 7910 - 7984
Alignment:
| Q |
168 |
gtggtgcatcataatatttgtggaacctcacaatctaaccatacattaaacttgctcagggtgggagacctatca |
242 |
Q |
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| T |
7910 |
gtggtgcatcataacatttgtggaacatcataatctaaccgtacatcaaactcacctacggtgggagacctatca |
7984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 4296848 - 4297082
Alignment:
| Q |
13 |
gagaaggttgaaagataaatcaaagaaagcgggaatgggataaatttggaaaagtagttggggaatggtagaagaaaacacaggaa-caggaaaggaact |
111 |
Q |
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| T |
4296848 |
gagaaggttgaaagataaatcaaagaaagcgagaatgggataagtttggaaaagtagttggggaatggtagaagaaaacacaagaaacaggaaaggaact |
4296947 |
T |
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| Q |
112 |
cagcagcaagaagagagaaagttaggggagagagaaagggaatgtataaagtgttggtggtgcatcataatatttgtggaacctcacaatctaaccatac |
211 |
Q |
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| T |
4296948 |
cagtagcaaga---gagaaagctaggggagagagagagggaatgtataaattgatggtggtgcatcataatatttgtggaacctcacaatctaaccatac |
4297044 |
T |
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| Q |
212 |
attaaacttgctcagggtgggagacctatcaaactctc |
249 |
Q |
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| T |
4297045 |
attaaacttgctcacggtgggagacctatcaaactctc |
4297082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 4296044 - 4295970
Alignment:
| Q |
168 |
gtggtgcatcataatatttgtggaacctcacaatctaaccatacattaaacttgctcagggtgggagacctatca |
242 |
Q |
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| T |
4296044 |
gtggtgcatcataacatttgtggaacatcataatctaaccgtacatcaaactcacctacggtgggagacctatca |
4295970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 3385500 - 3385262
Alignment:
| Q |
13 |
gagaaggttgaaagataaatcaaagaaagcgggaatgggataaatttggaaaagtagttggggaatggtagaagaaaacacaggaa-caggaaaggaact |
111 |
Q |
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| T |
3385500 |
gagaaggttgaaagataaatcgaagaaagcgagaatgagataaatttaaaaaagtagttggggaatggtagaagaaaacacaggaaacaggaaaggaact |
3385401 |
T |
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| Q |
112 |
cagcagcaagaagagagaaagttagggg-agagagaaagggaatgtataaagtgttggtggtgcatcataatatttgtggaacctcacaatctaaccata |
210 |
Q |
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| T |
3385400 |
cagtagcaagaagagagaaagctagggggagagagaaagggaatgtataaattgatggtggtgcatcataatatttgtggaacctcacaatctaaccata |
3385301 |
T |
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| Q |
211 |
cattaaacttgctcagggtgggagacctatcaaactctc |
249 |
Q |
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| T |
3385300 |
cattaaacttgctcatggtggaagacctatcaaactctc |
3385262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 9738633 - 9738702
Alignment:
| Q |
123 |
agagagaaagttaggggagagagaaagggaatgtataaagtgttggtggtgcatcataatatttgtggaa |
192 |
Q |
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| T |
9738633 |
agagagaaaggtaggatagagaaaaaaagcatgtataaggtgttggtggtgcatcataatatttgtggaa |
9738702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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