View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_197 (Length: 237)
Name: NF0856_high_197
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_197 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 35204173 - 35204327
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatca |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204173 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatca |
35204272 |
T |
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| Q |
129 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattac |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204273 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattac |
35204327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 55859453 - 55859307
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatca |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |
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| T |
55859453 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccatagtgctagg----tgacaggtttcatc- |
55859359 |
T |
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| Q |
129 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattac |
183 |
Q |
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|||| | |||||||||||||||||||| ||| ||||||||||||||| |||| |
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| T |
55859358 |
---aacattgatatattttcttggttccaatttcaaatattcatactcctcttac |
55859307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 3822574 - 3822720
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatca |
128 |
Q |
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|||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| ||| |
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| T |
3822574 |
aacttatatgctgtcatttagtggcagggaacatattatcatctatattcaattcaggtgcctagaaactatagtgctagg----tgacaggtttcatc- |
3822668 |
T |
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| Q |
129 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattac |
183 |
Q |
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|||| | |||||||||||||||||||| ||| ||||||||||||||| |||| |
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|
| T |
3822669 |
---aacattgatatattttcttggttccaatttctaatattcatactcctcttac |
3822720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 46267428 - 46267346
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
46267428 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaatgcaggtgcctagaaaccatagtgctaggtg |
46267346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 46267337 - 46267294
Alignment:
| Q |
140 |
tatattttcttggttccaacttccaatattcatactcctattac |
183 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||||||| |||| |
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|
| T |
46267337 |
tatattttcttggttccaatttctaatattcatactcctcttac |
46267294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 29275145 - 29275291
Alignment:
| Q |
29 |
aacttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatca |
128 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| |||| |
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| T |
29275145 |
aacttatatgttgtcatttagtggcaaggaacatttcatcatctatattcaattcaggtgactagaaaccatagtgctagg----tgacaggtttcatca |
29275240 |
T |
|
| Q |
129 |
acaaacactcatatattttcttggttccaacttccaatattcatactcctattac |
183 |
Q |
| |
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||| | |||| |||| |||||||||| ||| |||||||| |||||| |||| |
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| T |
29275241 |
acata----gatatttttttttggttccaatttcaaatattcacactcctcttac |
29275291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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