View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_199 (Length: 232)
Name: NF0856_high_199
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_199 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 35204181 - 35204413
Alignment:
| Q |
1 |
tgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggggcctagaaaccataatgctaggtgcatgacagggtttatcaacaaacac |
100 |
Q |
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| T |
35204181 |
tgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatcaacaaacac |
35204280 |
T |
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| Q |
101 |
tcatatattttcttggttccaacttccaatattcatactcctattacannnnnnnnnnactctatcttttaacaattatcc-nnnnnnnntattgaaaat |
199 |
Q |
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| T |
35204281 |
tcatatattttcttggttccaacttccaatattcatactcctattacatttttttttcactctatcttttgacaattatccaaaaaaaaatattgaaaat |
35204380 |
T |
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| Q |
200 |
gtgggactgtatattaacctagttctatatatt |
232 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
35204381 |
gtgggactgtatattaacctagttctatatatt |
35204413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 55859445 - 55859306
Alignment:
| Q |
1 |
tgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggggcctagaaaccataatgctaggtgcatgacagggtttatcaacaaacac |
100 |
Q |
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| T |
55859445 |
tgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccatagtgctagg----tgacaggtttcatc----aacat |
55859354 |
T |
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| Q |
101 |
tcatatattttcttggttccaacttccaatattcatactcctattaca |
148 |
Q |
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| T |
55859353 |
tgatatattttcttggttccaatttcaaatattcatactcctcttaca |
55859306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 3822585 - 3822721
Alignment:
| Q |
4 |
tgtcatttagtggcagggaacatttcatcatctatattcaattcaggggcctagaaaccataatgctaggtgcatgacagggtttatcaacaaacactca |
103 |
Q |
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| T |
3822585 |
tgtcatttagtggcagggaacatattatcatctatattcaattcaggtgcctagaaactatagtgctagg----tgacaggtttcatc----aacattga |
3822676 |
T |
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| Q |
104 |
tatattttcttggttccaacttccaatattcatactcctattaca |
148 |
Q |
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| T |
3822677 |
tatattttcttggttccaatttctaatattcatactcctcttaca |
3822721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 46267420 - 46267346
Alignment:
| Q |
1 |
tgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggggcctagaaaccataatgctaggtg |
75 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |
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| T |
46267420 |
tgttgtcatttagtggcagggaacatttcatcatctatattcaatgcaggtgcctagaaaccatagtgctaggtg |
46267346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 46267337 - 46267293
Alignment:
| Q |
104 |
tatattttcttggttccaacttccaatattcatactcctattaca |
148 |
Q |
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| T |
46267337 |
tatattttcttggttccaatttctaatattcatactcctcttaca |
46267293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 29275153 - 29275227
Alignment:
| Q |
1 |
tgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggggcctagaaaccataatgctaggtg |
75 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
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| T |
29275153 |
tgttgtcatttagtggcaaggaacatttcatcatctatattcaattcaggtgactagaaaccatagtgctaggtg |
29275227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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