View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0856_high_214 (Length: 220)

Name: NF0856_high_214
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0856_high_214
NF0856_high_214
[»] chr1 (7 HSPs)
chr1 (1-194)||(30741548-30741741)
chr1 (1-126)||(30784006-30784131)
chr1 (17-128)||(30761469-30761580)
chr1 (1-130)||(30808929-30809058)
chr1 (26-132)||(30801457-30801563)
chr1 (17-128)||(30749260-30749371)
chr1 (17-128)||(30770711-30770822)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 30741741 - 30741548
Alignment:
Q  1 ttactagtagtctaagatatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30741741 ttactagtagtctaagatatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcc 30741642  T
Q  101 tgaaaatcctatgagatacaggtaaatgaaaactacaaaacttgcactcttatgagaaaaatagatttaactttaaaaagatattcataatgta 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30741641 tgaaaatcctatgagatacaggtaaatgaaaactacaaaacttgcactcttatgagaaaaatagatttaactttaaaaagatattcataatgta 30741548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 30784131 - 30784006
Alignment:
Q  1 ttactagtagtctaagatatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcc 100  Q
    ||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||    
T  30784131 ttactagcagtcttagatatgaaactgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaccagtggcaacacttatggcc 30784032  T
Q  101 tgaaaatcctatgagatacaggtaaa 126  Q
    ||||||||| || | |||||||||||    
T  30784031 tgaaaatccaattacatacaggtaaa 30784006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 30761580 - 30761469
Alignment:
Q  17 atatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcctgaaaatcctatgaga 116  Q
    |||||||  ||| ||||||||| | |||||||| | ||||||||||||| || |||||||||||||||||  |||||| ||||||||| |||| |  | |    
T  30761580 atatgaatttgataaggttcatctttggagggacactcttagacacccagcttatcctttggaacagtggcaacacttgtggcctgaatatccaactaca 30761481  T
Q  117 tacaggtaaatg 128  Q
    ||||||||||||    
T  30761480 tacaggtaaatg 30761469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 30809058 - 30808929
Alignment:
Q  1 ttactagtagtctaagatatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcc 100  Q
    ||||||||||| | |  ||||| ||||||||||||||| ||||||| || | |||||| || | || | |||||||||| ||||||  |||| |||||||    
T  30809058 ttactagtagtatcaactatgacagtgaaaaggttcatctatggagagacaatcttaggcatcaatgttatcctttggagcagtggcaacacatatggcc 30808959  T
Q  101 tgaaaatcctatgagatacaggtaaatgaa 130  Q
    |||||||||    |||||||||||||||||    
T  30808958 tgaaaatccacctagatacaggtaaatgaa 30808929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 30801563 - 30801457
Alignment:
Q  26 tgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcctgaaaatcctatgagatacaggtaa 125  Q
    ||||||||||||| ||||| | || |||||| | ||||||| | |||||||||| || |||  ||||||||||||||||||||| |  | ||||||||||    
T  30801563 tgaaaaggttcatctatggcgagacagtcttcgccacccatgttatcctttggagcaatggcaacacttatggcctgaaaatccaactacatacaggtaa 30801464  T
Q  126 atgaaaa 132  Q
    || ||||    
T  30801463 ataaaaa 30801457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 30749371 - 30749260
Alignment:
Q  17 atatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcctgaaaatcctatgaga 116  Q
    ||||||| |||| ||||||||| ||||||||||   |||| |||| ||| || ||||||||||  |||||  |||||| ||||||||| |||| |  | |    
T  30749371 atatgaatgtgataaggttcatctatggagggactctcttcgacatccagcttatcctttggaggagtggcaacacttgtggcctgaatatccaaataca 30749272  T
Q  117 tacaggtaaatg 128  Q
    ||||||||||||    
T  30749271 tacaggtaaatg 30749260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 30770822 - 30770711
Alignment:
Q  17 atatgaaagtgaaaaggttcatttatggagggatagtcttagacacccatctcatcctttggaacagtggatacacttatggcctgaaaatcctatgaga 116  Q
    ||||||| |||| ||||||||| ||||||||||   |||| |||| ||| || ||||||||||  |||||  |||||| ||||||||| |||| |  | |    
T  30770822 atatgaatgtgataaggttcatctatggagggactctcttcgacatccagcttatcctttggaggagtggcaacacttgtggcctgaatatccaaataca 30770723  T
Q  117 tacaggtaaatg 128  Q
    ||||||||||||    
T  30770722 tacaggtaaatg 30770711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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