View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_217 (Length: 215)
Name: NF0856_high_217
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_217 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 35204174 - 35204294
Alignment:
| Q |
1 |
acttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35204174 |
acttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtgcatgacaggttttatcaa |
35204273 |
T |
|
| Q |
101 |
caaacactcatatatattctt |
121 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
35204274 |
caaacactcatatattttctt |
35204294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 55859452 - 55859371
Alignment:
| Q |
1 |
acttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
55859452 |
acttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccatagtgctaggtg |
55859371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 46267427 - 46267346
Alignment:
| Q |
1 |
acttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
46267427 |
acttatatgttgtcatttagtggcagggaacatttcatcatctatattcaatgcaggtgcctagaaaccatagtgctaggtg |
46267346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 29275146 - 29275227
Alignment:
| Q |
1 |
acttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
82 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
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| T |
29275146 |
acttatatgttgtcatttagtggcaaggaacatttcatcatctatattcaattcaggtgactagaaaccatagtgctaggtg |
29275227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 3822575 - 3822656
Alignment:
| Q |
1 |
acttatatgttgtcatttagtggcagggaacatttcatcatctatattcaattcaggtgcctagaaaccataatgctaggtg |
82 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
3822575 |
acttatatgctgtcatttagtggcagggaacatattatcatctatattcaattcaggtgcctagaaactatagtgctaggtg |
3822656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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