View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_22 (Length: 554)
Name: NF0856_high_22
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_22 |
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| [»] scaffold0107 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 274 - 549
Target Start/End: Complemental strand, 33017621 - 33017346
Alignment:
| Q |
274 |
actactaaagaagaatcagtttcaattcatatattgttccattggttttggaaaatgatttcaatagctctcataaatccacataactcaacctgattat |
373 |
Q |
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| T |
33017621 |
actactaaagaagaatcagtttcaattcatatattgttccattggttttgggaaatgatttcaatagctctcataaatccacatagctcagcctgattat |
33017522 |
T |
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| Q |
374 |
aagatgtgcaaataccaataggttctgagaaacataagattgcatctgaattgtgatccctaaatatccctccacatgttgaattacctggattgccatt |
473 |
Q |
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| T |
33017521 |
aagatgtgcaaataccaataggttctgagaaacataagattgcatctgaattgtgatccctaaatatccctccacatgttgaattacctggattgccatt |
33017422 |
T |
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| Q |
474 |
tgaggatccatcaatattgcatttggtccaattcaattgaggaggatcccatagaatttctttgatctctgctgct |
549 |
Q |
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| T |
33017421 |
tgaggctccatcaatattgcatttagtccaattcaattgaggaggatcccatagaatttctttgatcactggtgct |
33017346 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 449
Target Start/End: Original strand, 15799822 - 15799898
Alignment:
| Q |
373 |
taagatgtgcaaataccaataggttctgagaaacataagattgcatctgaattgtgatccctaaatatccctccaca |
449 |
Q |
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| T |
15799822 |
taagaagtgctaataccaataggatctgaaaaacaaaaaatagcatctgaattatgattcctaaaaatccccccaca |
15799898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 46243 - 46285
Alignment:
| Q |
123 |
agaccatggttagccaaagagtcagctgctcggtttccttctc |
165 |
Q |
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| T |
46243 |
agaccatggttagccaaagagtctgctacttggtttccttctc |
46285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 449
Target Start/End: Complemental strand, 29432407 - 29432331
Alignment:
| Q |
373 |
taagatgtgcaaataccaataggttctgagaaacataagattgcatctgaattgtgatccctaaatatccctccaca |
449 |
Q |
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||||| |||| |||||||||||| ||||| |||| || || ||||||||||| |||| |||||| ||||| ||||| |
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| T |
29432407 |
taagaagtgctaataccaataggatctgaagaacaaaaaatagcatctgaattatgattcctaaaaatccccccaca |
29432331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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