View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_224 (Length: 212)
Name: NF0856_high_224
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_224 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 32750128 - 32750284
Alignment:
| Q |
18 |
ccaacaaaatgaggttgctaagagaaaacattagcacttgtttgatcaaactcaaactatattattccaaaataaggttctcgaaaaagcttaggaaggc |
117 |
Q |
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| T |
32750128 |
ccaacaaaatgaggttgctaagagaaaaaatgggcacttgtttgatcaaactcaaactatattatttcaaaataaggttctcgaaaaagcttaggaaggc |
32750227 |
T |
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| Q |
118 |
agttttagctgcatcttatctcataaatcatttgccttctagtgtcttaattccaaa |
174 |
Q |
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| T |
32750228 |
agttttagctgcatcttatctcataaatcatttgccttctagtgtcttaattccaaa |
32750284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 50058774 - 50058921
Alignment:
| Q |
18 |
ccaacaaaatgaggttgctaagagaaaacattagcacttgtttgatcaaactcaaactatattattccaaaataaggttctcgaaaaagctt--aggaag |
115 |
Q |
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| T |
50058774 |
ccaacaaaatggggttgctgagagaaaaaatgggcatttgttagatcaaactcgagctatgttattccaaaataaggttcctaagaaattttggggggag |
50058873 |
T |
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| Q |
116 |
gcagttttagctgcatcttatctcataaatcatttgccttctagtgtc |
163 |
Q |
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| T |
50058874 |
gcagttttaacagcatcttacctcataaaccgtttaccttctagtgtc |
50058921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 28094660 - 28094515
Alignment:
| Q |
20 |
aacaaaatgaggttgctaagagaaaacattagcacttgtttgatcaaactcaaactatattattccaaaataaggttctcgaaaaagctt--aggaaggc |
117 |
Q |
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| T |
28094660 |
aacaaaatggggttgctgagagaaaaaatggccatttgttagatcaaactcaagctatgttatttcaaaataaggttcctaagagattttggggggaggc |
28094561 |
T |
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| Q |
118 |
agttttagctgcatcttatctcataaatcatttgccttctagtgtc |
163 |
Q |
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|||||| |||||||||||||||||||| ||| |||||||||||| |
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| T |
28094560 |
ggttttaattgcatcttatctcataaatcgtttaccttctagtgtc |
28094515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 31972615 - 31972658
Alignment:
| Q |
120 |
ttttagctgcatcttatctcataaatcatttgccttctagtgtc |
163 |
Q |
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| T |
31972615 |
ttttagctgcatcttatctcataaatcgtttaccttctaatgtc |
31972658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 29442408 - 29442362
Alignment:
| Q |
119 |
gttttagctgcatcttatctcataaatcatttgccttctagtgtctt |
165 |
Q |
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|||||| ||||||||||||||||||||| ||| ||||||| |||||| |
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| T |
29442408 |
gttttaactgcatcttatctcataaatcgtttaccttctattgtctt |
29442362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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