View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_225 (Length: 212)
Name: NF0856_high_225
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_225 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 31059425 - 31059558
Alignment:
| Q |
1 |
tcatcaccgtccattcccacaacctctggccactcattcttccctaaagtaaaataatcattaaaattcaatattagtaag--catgtacacataataca |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31059425 |
tcatcaccgtccattcccacaacctctggccactcattcttccctaaagtaaaataatcattaaaattcaatattagtaagcacatgtacacataataca |
31059524 |
T |
|
| Q |
99 |
attatatctatagattatagaattcaatccctat |
132 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31059525 |
attatatctatagattatagaattcaatccctat |
31059558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31068101 - 31068185
Alignment:
| Q |
1 |
tcatcaccgtccattcccacaacctctggccactcattcttccctaaagtaaaataatcattaaaattcaatattagtaagcatgtaca |
89 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31068101 |
tcatcaccgtccattcccacaacctctggccatttattcttccctaaagta----aatcattaaaattcaatattagtaagcatgtaca |
31068185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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