View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0856_high_23 (Length: 543)
Name: NF0856_high_23
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 80 - 419
Target Start/End: Complemental strand, 22326540 - 22326200
Alignment:
| Q |
80 |
attcttatccttccaatctcccttacagcagcacggcgggcacatcactctcgtaaaccaggttgctaatataattgag-tannnnnnnnnatctgttgc |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | || | ||||||| |||||||||| |||||||||| | | ||||||||| |
|
|
| T |
22326540 |
attcttatccttccaatctcccttacagcatcacggcggccgcagccctctcgttcaccaggttgccaatataattggggtttttttttttatctgttgc |
22326441 |
T |
|
| Q |
179 |
tgaatactatgcgaatctgcgactatatgatctatttatataacattctttagtgtttttattctatgtttttgtaaaactaaacactgttttttgtatt |
278 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22326440 |
tgaattctatgcgaatctgcgactatatgatctatttatataacattctttagtgtttttattcaatgtttttgtaaaactaaacactgttttttgtatt |
22326341 |
T |
|
| Q |
279 |
tctttagagaaagaactggaaagaaaaacaatggcctatcttgtcaaatctgtgggttacgttgctcaatggaaattgaatgtcaacaacttggatcaga |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22326340 |
tctttagagaaagaactggaaagaaaaacaatggcctatcttgtcaaatcagtgggttaccttgctcaatggaaattgaatgtcaacaacttggatcaga |
22326241 |
T |
|
| Q |
379 |
atgaacccaaacacatatccaatacattcaaaattgatatg |
419 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22326240 |
atgaacccaaacacatatccgatacattcaaaattgatatg |
22326200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 22334798 - 22334720
Alignment:
| Q |
5 |
catcaaacaacaccaaccgacttctctctaagatttaattaactccgaccaccacaaaccaattataaaatcaccattc |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22334798 |
catcaaacaacaccaaccgacttctctctaagatttaattaactccgaccaccacaaaccaattataaaatcaccattc |
22334720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2243 times since January 2019
Visitors: 6160