View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_24 (Length: 524)
Name: NF0856_high_24
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 167 - 500
Target Start/End: Complemental strand, 41827044 - 41826710
Alignment:
| Q |
167 |
cttctagattgctggaattttcaagatgatggtacttccacttttgggccagctttcagatgatcatggtcgcaaacctttcctccttcttaccatgtcc |
266 |
Q |
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| T |
41827044 |
cttctagattgctggaattttcaagatgatggtacttccacttttgggccagctttcagatgatcatggtcgcaaacctttcctccttcttaccatgtcc |
41826945 |
T |
|
| Q |
267 |
accaccatatttccttttggtaatttcaattttgcttaatctaa-tatattggtgatgttaagtaattaaattagagtttaatttactgtaagtgtaaaa |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41826944 |
accaccatatttccttttggtaatttcaattttgcttaatctaaatatattggtgatgttaagtaattaaattagagtttaatttactgtaagtgtaaaa |
41826845 |
T |
|
| Q |
366 |
aagtttggactgttagcacgtcacaaccaatctcatgtttgattttaaaacattatgataaaaagttgaacgttttcaatgatctaacggttatgattga |
465 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
41826844 |
gagtttggactgttagcacgtcacaaccaatcacatgtttgattttaaaacattatgataaaaagttgaatgttttcaatgatctaacgattatgattga |
41826745 |
T |
|
| Q |
466 |
ttgatagtgtaaactctcattattacgtatgattc |
500 |
Q |
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| T |
41826744 |
ttgatagtgtaaactctcattattacgtatgattc |
41826710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 41827181 - 41827086
Alignment:
| Q |
30 |
tttatgtcctcaacaatcatcttgttccaaagccatttacattaatggccttcaagaaacagtatgtattatcacaaattcatacgatcaaccaac |
125 |
Q |
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| T |
41827181 |
tttatgtcctcaacaatcatcttgttccaaagccatttacattaatggccttcaagaaacagtatgtattatcacaaattcatatgatcaaccaac |
41827086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 167 - 298
Target Start/End: Complemental strand, 41820312 - 41820181
Alignment:
| Q |
167 |
cttctagattgctggaattttcaagatgatggtacttccacttttgggccagctttcagatgatcatggtcgcaaacctttcctccttcttaccatgtcc |
266 |
Q |
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|||||||||| ||||||||||||||||| ||| ||||| |||||||| |||||||||||||| || |||||||||||||| |||||||||||||| ||| |
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| T |
41820312 |
cttctagattactggaattttcaagatggcggtgcttccccttttgggtcagctttcagatgaacacggtcgcaaacctttactccttcttaccatatcc |
41820213 |
T |
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| Q |
267 |
accaccatatttccttttggtaatttcaattt |
298 |
Q |
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|||| ||| | ||||||||||||| |||||| |
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| T |
41820212 |
accagtataataccttttggtaattacaattt |
41820181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 41820476 - 41820402
Alignment:
| Q |
30 |
tttatgtcctcaacaatcatcttgttccaaagccatttacattaatggccttcaagaaacagtatgtattatcac |
104 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||||||||||| |
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| T |
41820476 |
tttatgccctcaacaatcatcttgctccaaagctatttacatcaatggccttcaacaaacagtatgtattatcac |
41820402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 41820138 - 41820095
Alignment:
| Q |
295 |
attttgcttaatctaatatattggtgatgttaagtaattaaatt |
338 |
Q |
| |
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|||||| |||||||||||| ||||||||| |||||||||||||| |
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| T |
41820138 |
attttggttaatctaatatgttggtgatgctaagtaattaaatt |
41820095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 478
Target Start/End: Original strand, 4076065 - 4076104
Alignment:
| Q |
439 |
tttcaatgatctaacggttatgattgattgatagtgtaaa |
478 |
Q |
| |
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| T |
4076065 |
tttcaatgatctaacgattatgattgattgatagtgtaaa |
4076104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 475
Target Start/End: Complemental strand, 33657439 - 33657402
Alignment:
| Q |
438 |
ttttcaatgatctaacggttatgattgattgatagtgt |
475 |
Q |
| |
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||||||||||| | |||||||||||||||||||||||| |
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| T |
33657439 |
ttttcaatgatttgacggttatgattgattgatagtgt |
33657402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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