View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0856_high_26 (Length: 515)
Name: NF0856_high_26
Description: NF0856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0856_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 207 - 512
Target Start/End: Complemental strand, 7766896 - 7766592
Alignment:
| Q |
207 |
gatatgacttcgcaaacttaagtagagaaaagaacatgtacatgtgttacattttaacnnnnnnnntctatcttattttcgatagctttatgcattgaat |
306 |
Q |
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| T |
7766896 |
gatatgacttcgcaaacttaagtatagaaaagaacatgtacatgtgttacattttaacaaaaaaa-tctatcttattttcgatagctttatgcattgaat |
7766798 |
T |
|
| Q |
307 |
gaagtgtcaagacttcaagttgggttcaatttaaacatgcattgcagatgtgcnnnnnnntcttgccagtgaatatttacattatacattaaatgaagtg |
406 |
Q |
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| T |
7766797 |
gaagtgtcaagacttcaagttgggttcaatttaaacatgcattgcagatgtgtaaaaaaatcttgccagtgaatatttacattatacattaaatgaagtg |
7766698 |
T |
|
| Q |
407 |
ttaaaacttgtaactgaaacactatttaggatcatggttgaaaacagagaaatggcaagagctaaagtagaaattaaagagcaaaaccttatatattctt |
506 |
Q |
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| T |
7766697 |
ttaaaacttgtaactgaaacactatttaggatcatagttgaaaacagagaaatggcaagagctaaagtagaaattaaagagcaaaaccttatatatcctt |
7766598 |
T |
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| Q |
507 |
cgacat |
512 |
Q |
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| |||| |
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| T |
7766597 |
caacat |
7766592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 7767099 - 7766899
Alignment:
| Q |
30 |
attctatacaatcatatcaagattgaaattaaacaacgaataatgaacataaataaataagagtttaatgatatgaagacaggacaacaaaaactaaaat |
129 |
Q |
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| T |
7767099 |
attctatacaatcatatcaagattgaaattaaacaacgaataatgaacataaataaataagagtttaatgatatgaagacaggacaacaaaaactaaaat |
7767000 |
T |
|
| Q |
130 |
tggaagttatctaatgcgtgtctattccatttcaccatttacaagcaatgaatgaatagttttaggtatttcctattgatatgacttcgcaaacttaagt |
229 |
Q |
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| T |
7766999 |
tggaagttatctaatgcgtgtctattccatttcaccatttacaagcaatgaatgaataattttaggtatttcctattgatatgacttcgcaaacttaagt |
7766900 |
T |
|
| Q |
230 |
a |
230 |
Q |
| |
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| |
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| T |
7766899 |
a |
7766899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 273 - 354
Target Start/End: Complemental strand, 7787806 - 7787725
Alignment:
| Q |
273 |
tctatcttattttcgatagctttatgcattgaatgaagtgtcaagacttcaagttgggttcaatttaaacatgcattgcaga |
354 |
Q |
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| T |
7787806 |
tctatcttatttttgttagctttatgcattgaatgaagtctcaagacttcaagttgggttcaatttaaacatgcattccaga |
7787725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 7791309 - 7791212
Alignment:
| Q |
93 |
tttaatgatatgaagacaggacaacaaaaa--ctaaaattggaagttatc-taatgcgtgtctattccatttcaccatttacaagcaatgaatgaata |
187 |
Q |
| |
|
||||||||||||| |||| |||| ||||| |||||||||||||||||| | || ||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
7791309 |
tttaatgatatgatgacaacacaaaaaaaaagctaaaattggaagttatccttatctgtgtctattccatttcaccatttacaaacaatggatgaata |
7791212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 7236733 - 7236827
Alignment:
| Q |
93 |
tttaatgatatgaagacaggacaacaaaaactaaaattggaagttatc-taatgcgtgtctattccatttcaccatttacaagcaatgaatgaata |
187 |
Q |
| |
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||||||||||||| || | |||| |||| ||||||||| |||||||| | || |||||||||||||||||| |||||||| ||||| ||||||| |
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| T |
7236733 |
tttaatgatatgatgataacacaa-aaaagctaaaattgtaagttatccttatctgtgtctattccatttcactatttacaaacaatggatgaata |
7236827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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